New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5560404 =	62 (1.090)	4 (0.070)	4/248	NT	6.6%	coding (93/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	NC_002947	5560445 =	54 (1.000)					coding (52/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GCCGCCCGGACCAGAGGGGAAATGGCGTAATGGCAACGGTAGACCGCTGGCTGCTGCCAGATGGCATCGAGGAAGTACTGCCACCTGAGGCTGCGCGC‑ATCGAGAT‑CGCGCGCCGCCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5560525‑5560404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtgGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGC  >  NC_002947/5560445‑5560591                                                                                                                                                                                                                                                                                 GCCGCCCGGACCAGAGGGGAAATGGCGTAATGGCAACGGTAGACCGCTGGCTGCTGCCAGATGGCATCGAGGAAGTACTGCCACCTGAGGCGGCGCGCGATCTCGATGCGCGCAGCCTCAGGTGGCAGTACTTCCTCGATGCCATCTGG                                                                                                                            <  7:7735/149‑1                                                                               TGCCACCTGAGGCTGCGCGC‑ATCGAGAT‑CGCGCGCCGCCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGA                                             >  7:152273/1‑148                                                                                    CCTGAGGCTGCGCGC‑ATCGAGAT‑CGCGCGCCGCCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCC                                       >  5:59802/1‑149                                                                                     CTGAGGCTGCGCGC‑ATCGAGAT‑CGCGCGCCGCCAGGTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCG                                      <  6:59802/149‑1                                                                                                                          GTGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAG   >  4:263255/1‑149                                                                                                                          GTGGCAGTACTTCCTCCATGCCATCTGACAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAG   <  3:49635/149‑1                                                                                                                           TGGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGC  <  3:292037/149‑1                                                                                                                                                                                                                                                                                 GCCGCCCGGACCAGAGGGGAAATGGCGTAATGGCAACGGTAGACCGCTGGCTGCTGCCAGATGGCATCGAGGAAGTACTGCCACCTGAGGCTGCGCGC‑ATCGAGAT‑CGCGCGCCGCCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5560525‑5560404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtgGCAGTACTTCCTCGATGCCATCTGGCAGCAGCCAGCGGTCTACCGTTGCCATTACGCCATTTCCCCTCTGGTCCGGGCGGCTTGCCAGCAGGCAAACCGTCAGAAAAGCCGGTATCGCGCACAGCAGCGGGCAGCACTGATCCCAGC  >  NC_002947/5560445‑5560591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.