New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5699460	53 (0.940)	4 (0.080)	4/244	NT	7.1%	intergenic (+206/‑63)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	= 5699488	55 (1.030)					intergenic (+234/‑35)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase

TGACTTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5699305‑5699460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaccggTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGGAACTTGCCACACCCATTGGTTACCCGACTTTCGTG  <  NC_002947/5699488‑5699346                                                                                                                                                                                                                                                                                                             TGACTTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGCTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCA                                                                                                                                                        <  1:295900/149‑1     TTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTATGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTAC                                                                                                                                                    >  3:241019/1‑149                                            CGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACT                                                                                                             <  4:250188/149‑1                                             GAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTG                                                                                                            <  6:342886/149‑1                                                                           TTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCC                                                                                                                          >  7:108683/1‑105                                                                           TTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCC                                                                                                                          <  8:108683/105‑1                                                                                                                                                      GTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGGAACTTGCCACACCCATTGGTTACCCGACTTTCGT   <  7:175762/149‑1                                                                                                                                                       TACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGGAACTTGCCACACCCATTGGTTACCCGACTTTCGTG  >  4:71679/1‑149                                                                                                                                                          CGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGGAACTTGCCACACCCATT                    >  7:32321/1‑128                                                                                                                                                                                                                                                                                                             TGACTTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5699305‑5699460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaccggTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGGAACTTGCCACACCCATTGGTTACCCGACTTTCGTG  <  NC_002947/5699488‑5699346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.