New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6070525	53 (0.940)	4 (0.070)	4/248	NT	7.0%	coding (120/891 nt)	PP_5324	two‑component system response regulator
	?	NC_002947	= 6070551	55 (1.020)					coding (94/891 nt)	PP_5324	two‑component system response regulator

CTTGTCGCCACGGCTGGTCACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6070372‑6070525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggccATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAACCTGC  <  NC_002947/6070551‑6070404                                                                                                                                                                                                                                                                                                                CTTGTCGCCACGGCTGGTCACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCA                                                                                                                                                           >  8:37045/1‑149    GTCGCCACGGCTGGTCACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATG                                                                                                                                                         <  8:268101/148‑1    GTCGCCACGGCTGGTCACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGACGAGCATGGCCATGG                                                                                                                                                        >  4:101332/1‑149     TCGCCACGGCTGGTCACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGG                                                                                                                                                        <  6:63847/148‑1                                        CTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATTGCCATCGACGACGCTATCAACGGTCGCAAGGCCATG                                                                                                                     <  1:57977/148‑1                                           CAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACCCTTCCTTGCCGAGCATGGCCATGGCCATCGACGACGCTATCAACGGTCGCAAGGCCATGG                                                                                                                    <  5:233507/146‑1                                             GTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCATCGACGACGCTATCAACGGTCGCAAGG                                                                                                                          >  8:49201/1‑138                                             GTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCCATCGACGACGCTATCAACGGTCGCAAGG                                                                                                                          <  7:49201/138‑1                                                                                                                                                      TGGCCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAAC      <  1:304795/149‑1                                                                                                                                                      TGGCCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAA       <  5:24669/148‑1                                                                                                                                                      TGGCCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCATCAGCAGCCTGCACTGAAGAAC      <  7:53634/149‑1                                                                                                                                                       GGCCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAAC      <  5:288720/148‑1                                                                                                                                                         CCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAACCTG   >  7:100165/1‑149                                                                                                                                                         CCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAA                                                           <  7:1455/93‑1                                                                                                                                                         CCATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAA                                                           >  8:1455/1‑93                                                                                                                                                          CATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAACCTGC  <  2:57044/149‑1                                                                                                                                                          CATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAACCTG   >  4:212631/1‑148                                                                                                                                                          CATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTG                                  <  7:290783/117‑1                                                                                                                                                          CATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTG                                  >  8:290783/1‑117                                                                                                                                                                                                                                                                                                                CTTGTCGCCACGGCTGGTCACCATGATGAACTGCAGGTTCTTCAGTGCAGGCTGCTGACGGCACCAGGTCAGCAATTCCAAGCCAGACATTTCCGGCATTTCCCAGTCGCACAGGACCAGGTCGAACGCTTCCTTGCCGAGCATGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6070372‑6070525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggccATCGACGACGCTATCAACGGTCGCAAGGCCATGGCCATGCTCGGCAAGGAAGCGTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCTGGCTTGGAATTGCTGACCTGGTGCCGTCAGCAGCCTGCACTGAAGAACCTGC  <  NC_002947/6070551‑6070404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.