| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1296609 | 3 (0.050) | 4 (0.110) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA |
8/164 | NT | 18.0% | intergenic (‑362/‑204) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA/transposase |
| ? | NC_002947 | 5545626 = | 55 (0.970) | intergenic (‑766/+111) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
GGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGT > NC_002947/1296462‑1296712 | gggACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTc > 7:57244‑M1/1‑148 (MQ=255) acaaTTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCtt < 4:271069/146‑1 (MQ=37) ccATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttt < 8:57244‑M1/149‑6 (MQ=255) cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTg > 3:217095/1‑149 (MQ=38) aTTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGAGTACGGCGTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt > 5:20829/1‑149 (MQ=255) ttGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt > 8:89005/1‑148 (MQ=35) gtgtAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaaaatgtc < 5:202357‑M1/149‑16 (MQ=255) tgtAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTcttttt > 5:243224‑M1/1‑133 (MQ=255) tgtAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTcttttt < 6:243224‑M1/139‑7 (MQ=255) tAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaaaatgtca < 7:237482‑M1/148‑17 (MQ=255) gaTCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaaaa < 7:248060‑M1/137‑12 (MQ=255) gaTCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaaaa > 8:248060‑M1/1‑126 (MQ=255) ttCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaa > 7:186138‑M1/1‑114 (MQ=255) ttCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaa < 8:186138‑M1/123‑10 (MQ=255) agGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTgctttttcaaaatgtcagcgtcgctgcggaactgaa > 4:342762‑M1/1‑33 (MQ=255) agGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTgctttttcaaaatgtcagcgtcgctgcggaactgaa < 3:342762‑M1/69‑37 (MQ=255) gCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcg > 2:359984‑M1/1‑31 (MQ=255) gCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcg < 1:359984‑M1/90‑60 (MQ=255) gTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatctcctacagggccc < 1:262856‑M1/131‑104 (MQ=255) gTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctgggtgatctcctacagggccc > 2:262856‑M1/1‑28 (MQ=255) | GGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGT > NC_002947/1296462‑1296712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |