New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2730749	44 (0.780)	5 (0.090)	5/244	NT	10.8%	coding (86/2361 nt)	polB	DNA polymerase II
	?	NC_002947	= 2730786	41 (0.770)					coding (123/2361 nt)	polB	DNA polymerase II

ACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCC  >  NC_002947/2730619‑2730896                                                                                                                                   |                                                                                                                                                    acaGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGtt                                                                                                                                   >  3:187454/1‑149 (MQ=255)   aGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgc                                                                                                                                  >  4:65544‑M1/1‑129 (MQ=255)         aaTAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTgg                                                                                                                           >  5:178375/1‑149 (MQ=255)         aaTAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCAACGATGCCGGGCCGCGAATGTTGCGGCTgg                                                                                                                           >  5:321427/1‑149 (MQ=255)             aCGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTggcggc                                                                                                                       >  4:219442/1‑149 (MQ=255)                 cATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAg                                                                                                                   <  5:191042/149‑1 (MQ=255)                 cATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAg                                                                                                                   <  7:303907/149‑1 (MQ=255)                 cATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGGTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAg                                                                                                                   <  7:4832/149‑1 (MQ=255)                      aaaGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatc                                                                                                              >  5:58441‑M1/1‑110 (MQ=255)                      aaaGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtc                                                                                                              <  6:140881‑M2/149‑3 (MQ=255)                          aCAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatcggtg                                                                                                          <  2:206189‑M1/149‑44 (MQ=255)                             aTCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGgcggcg                                                                                                                      <  7:150529/134‑1 (MQ=255)                             aTCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGgcggcg                                                                                                                      >  8:150529/1‑134 (MQ=255)                              tCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatcggtggcca                                                                                                      <  6:58441‑M1/149‑48 (MQ=255)                                cAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCttt                                                                                                     <  4:339860/148‑1 (MQ=255)                                 agagGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatcggtggccagcc                                                                                                   <  3:65544‑M1/149‑51 (MQ=255)                                 agagGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCa                                                                                                   <  5:322829/149‑1 (MQ=255)                                 agagGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCa                                                                                                   >  6:322829/1‑149 (MQ=255)                                   agGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCAtt                                                                                                 <  5:139755/149‑1 (MQ=255)                                      tCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCt                                                                                              >  5:43370/1‑149 (MQ=255)                                             aGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGgcgc                                                                                       <  6:178375/149‑1 (MQ=255)                                                         gcagGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACg                                                                           >  8:127803/1‑149 (MQ=255)                                                          cagGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTATCATTCCTCAGGCGCAGGCCGAGCACGc                                                                          <  1:204613/149‑1 (MQ=255)                                                               ttttGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTc                                                                                                    <  4:198384/118‑1 (MQ=255)                                                               ttttGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTc                                                                                                    >  3:198384/1‑118 (MQ=255)                                                                    tCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGtgctg                                                                >  7:175249/1‑149 (MQ=255)                                                                      cTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTgctgct                                                              <  6:43370/149‑1 (MQ=255)                                                                        gACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTgg                                                            >  4:327598/1‑149 (MQ=255)                                                                             ggCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAAc                                                       <  8:87843/149‑1 (MQ=255)                                                                                aCTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGGTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGa                                                     >  4:338531/1‑148 (MQ=255)                                                                                    gCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCg                                                >  2:298531/1‑149 (MQ=255)                                                                                     cACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCgg                                               >  6:237089/1‑149 (MQ=255)                                                                                     cACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCgg                                               <  7:127803/149‑1 (MQ=255)                                                                                         aTACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGAc                                            >  2:14144/1‑148 (MQ=255)                                                                                               cGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCt                                      >  8:245205/1‑148 (MQ=255)                                                                                                 gAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCaa                                   <  8:175249/149‑1 (MQ=255)                                                                                                      cACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCAc                              <  1:14144/149‑1 (MQ=255)                                                                                                         cTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGc                                                           <  1:177266/117‑1 (MQ=255)                                                                                                         cTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGc                                                           >  2:177266/1‑117 (MQ=255)                                                                                                              tGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCGCAAGCCACTGCGCCt                       >  8:23393/1‑148 (MQ=255)                                                                                                                gAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTg                      >  8:84462/1‑147 (MQ=255)                                                                                                                       ggctggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctct             <  3:65544‑M2/149‑100 (MQ=255)                                                                                                                        gctggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTc             >  6:323268/1‑148 (MQ=255)                                                                                                                        gctggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCCGGGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACtt              <  1:298531/147‑1 (MQ=255)                                                                                                                          tggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctgga          <  6:58441‑M2/149‑103 (MQ=255)                                                                                                                            gcCACCGATGCCGGGCCGCGACTGTTGCGGGTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAg          <  3:338531/147‑1 (MQ=255)                                                                                                                            gcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAg          <  7:23393/147‑1 (MQ=255)                                                                                                                             ccACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCAt       <  5:237089/149‑1 (MQ=255)                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctggattgt      <  2:206189‑M2/149‑107 (MQ=255)                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATc      <  4:187454/149‑1 (MQ=255)                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATc      <  3:219442/149‑1 (MQ=255)                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATc      >  4:47316/1‑149 (MQ=255)                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATc      >  6:36029/1‑149 (MQ=255)                                                                                                                                 cGATGCCGGGCCGCGACTGTTGCGGCGGGCGGCGCGGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCg     <  6:321427/147‑1 (MQ=255)                                                                                                                                  gActcctgcgccgccagccgcaacagtcgcggcccggcatcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctggattgtcttt  <  6:140881‑M1/149‑148 (MQ=255)                                                                                                                                  gATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctggattgtcttt  >  5:58441‑M2/1‑39 (MQ=255)                                                                                                                                   aTGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGccc  >  7:145172/1‑148 (MQ=255)                                                                                                                                   aTGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGccc  <  8:145172/148‑1 (MQ=255)                                                                                                                                   |                                                                                                                                                    ACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCC  >  NC_002947/2730619‑2730896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.