New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3456775 =54 (0.950)3 (0.060) 3/250 NT 5.3% coding (514/771 nt) hbdH 3‑hydroxybutyrate dehydrogenase
?NC_002947 3456819 = 55 (1.010)coding (470/771 nt) hbdH 3‑hydroxybutyrate dehydrogenase

AGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGCCCGGCAG  >  NC_002947/3456629‑3456922
                                                                                                                                                  |                                                                                                                                                   
aGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACtggtgg                                                                                                                                                   >  6:98960/1‑149 (MQ=255)
    aGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGt                                                                                                                                               <  1:118787/149‑1 (MQ=255)
       gACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTc                                                                                                                                            <  6:259916/149‑1 (MQ=255)
               cTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCg                                                                                                                                     <  5:344579/148‑1 (MQ=255)
                ttttCTTCCAGCTCATCGTGGTGCTGTTGGAGCCGATCGGCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGac                                                                                                                                   <  6:54405/149‑1 (MQ=255)
                 tttCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGacc                                                                                                                                  >  7:296149/1‑149 (MQ=255)
                     tGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCt                                                                                                                              >  2:270998/1‑149 (MQ=255)
                       ccAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTg                                                                                                                            <  1:270998/149‑1 (MQ=255)
                       ccAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTg                                                                                                                            <  7:69281/149‑1 (MQ=255)
                       ccAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTGGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTg                                                                                                                            >  5:366172/1‑149 (MQ=255)
                         agcagATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGt                                                                                                                          >  6:186892/1‑149 (MQ=255)
                         agcagATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGt                                                                                                                          <  5:98960/149‑1 (MQ=255)
                           cagATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGt                                                                                                                          >  8:187540/1‑147 (MQ=255)
                                     tgcGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCAc                                                                                                              >  8:109078/1‑149 (MQ=255)
                                     tgcGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCAc                                                                                                              >  4:235672/1‑149 (MQ=255)
                                       cgcTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACg                                                                                                             <  4:257308/148‑1 (MQ=255)
                                          ctgccgggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctgggcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCAt                                                                                                         >  4:183411‑M1/105‑149 (MQ=255)
                                                ggcatgcgcacgcgcaactgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtggcagccaagcaTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTgg                                                                                                   >  1:134670‑M1/99‑149 (MQ=255)
                                                ccGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTgg                                                                                                   >  5:159714/1‑149 (MQ=255)
                                                          cccTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         <  3:235672/149‑1 (MQ=255)
                                                            cTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAgg                                                                                       >  1:132826/1‑149 (MQ=255)
                                                             ttGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         >  4:244261/1‑146 (MQ=255)
                                                             ttGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         <  3:244261/146‑1 (MQ=255)
                                                               ggCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGGGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCt                                                                                     <  6:366172/148‑1 (MQ=255)
                                                                gCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGc                                                                                   >  5:205862/1‑149 (MQ=255)
                                                                 ctgggggcgcatcatcaatatcgcttcggtgcatggcctggtcggctcgattggcaaggcagcctacgtgaaagccaagcaTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATAACGCCATGc                                                                                                       <  1:294619‑M1/47‑1 (MQ=255)
                                                                   gCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCtt                                                                                <  7:655/149‑1 (MQ=255)
                                                                     aCGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGc                                                                              <  6:159714/149‑1 (MQ=255)
                                                                     aCGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGc                                                                              <  7:109078/149‑1 (MQ=255)
                                                                     aCGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGc                                                                              >  8:289143/1‑149 (MQ=255)
                                                                         tcgtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCaa                                                                           >  2:229787/1‑148 (MQ=255)
                                                                         tcgtcgATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAAt                                                                          >  6:54268/1‑149 (MQ=255)
                                                                            tcgATCCGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGa                                                                       <  1:105590/149‑1 (MQ=255)
                                                                              gATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGc                                                                     >  3:168495/1‑149 (MQ=255)
                                                                                 cTGCTTTTGCACCAGCGGTGTCGTAACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGATGCCACGTAGGCTGCCTTGCCAATCGAGCCGa                                                                  >  7:55498/1‑149 (MQ=255)
                                                                                    cTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGAcc                                                                <  7:187540/148‑1 (MQ=255)
                                                                                       ttGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGc                                                            >  7:129112/1‑149 (MQ=255)
                                                                                          cACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCAt                                                         <  4:106813/149‑1 (MQ=255)
                                                                                           aCCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATg                                                        >  8:220234/1‑149 (MQ=255)
                                                                                             cAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACAAGGCCATGCa                                                      >  8:85116/1‑149 (MQ=255)
                                                                                                     tCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGc                                               >  6:175956/1‑148 (MQ=255)
                                                                                                     tCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGc                                               >  2:213561/1‑148 (MQ=255)
                                                                                                      cAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGa                                             <  7:289143/149‑1 (MQ=255)
                                                                                                         cACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGatat                                          >  1:152352/1‑149 (MQ=255)
                                                                                                         cACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGatat                                          <  7:85116/149‑1 (MQ=255)
                                                                                                          aCCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATAtt                                         <  7:220234/149‑1 (MQ=255)
                                                                                                               gCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATtgatga                                    >  6:220444/1‑149 (MQ=255)
                                                                                                                  cGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATgc                                 <  8:296149/149‑1 (MQ=255)
                                                                                                                   gggCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         >  5:188476/1‑92 (MQ=255)
                                                                                                                   gggCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         <  6:188476/92‑1 (MQ=255)
                                                                                                                    ggCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATgcgc                               <  1:229787/149‑1 (MQ=255)
                                                                                                                        tatGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGcccc                            >  5:75741/1‑148 (MQ=255)
                                                                                                                              aTTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTgc                     <  5:54268/149‑1 (MQ=255)
                                                                                                                                   aGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTg                >  7:341562/1‑149 (MQ=255)
                                                                                                                                     gTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         >  4:296879/1‑74 (MQ=255)
                                                                                                                                     gTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTa                                                                                         <  3:296879/74‑1 (MQ=255)
                                                                                                                                     gTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTgcg              <  5:175956/149‑1 (MQ=255)
                                                                                                                                      tGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTgcg              >  2:100449/1‑148 (MQ=255)
                                                                                                                                                 gTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGcccggaag  <  7:52299‑M1/148‑4 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
AGCCAGCGACGGTTGCTTTTCTGCCAGCAGATCGTGCTGCGCTTGCAGCCGATCGCCACCCTTGGCCGCACGATCGTCGATCTGCTTTTGCACCAGCGGTGTCAGCACCCAGCCCGGGCATATGGCATTGCAGGTGACATGACTGGTGGCGGTTTCCAGGCCGACCACCTTGGTCAGGCCGATCACGCCATGCTTGGCTGCCACGTAGGCTGCCTTGCCAATCGAGCCGACCAGGCCATGCACCGAAGCGATATTGATGATGCGCCCCCAGTTGCGCGTGCGCATGCCCGGCAG  >  NC_002947/3456629‑3456922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.