New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4383136 =	46 (0.810)	5 (0.090)	3/244	NT	9.9%	coding (719/804 nt)	PP_3858	tail fiber protein
	?	NC_002947	4383173 =	48 (0.900)					coding (682/804 nt)	PP_3858	tail fiber protein

ATCGCACGGAACATCGGAATGGAAGAACGCCAGTCGCGACGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGTTGGACT  >  NC_002947/4382989‑4383282                                                                                                                                                    |                                                                                                                                                   aTCGCACGGAACATCGGAATGGAAGAACGCCAGTCGCGACGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCa                                                                                                                                                    <  2:40215/148‑1 (MQ=255)      gcgtcgtgggagcgcgatggctcaaccggcgcagtccaacagtacggtgtgttcaacatggcggcaggccccaatgagcagactatccccttcccggtgagctttcctaccgcatgcaggtatgtggggctgaccaacctggAGGATgc                                                                                                                                              >  5:91759‑M1/143‑149 (MQ=255)                ggAATGGAAGAACGCCAGTCGCGACGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTAtt                                                                                                                                    <  1:247591/149‑1 (MQ=255)                 gAATGGAAGAACGCCAGTCGCGACGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTg                                                                                                                                   <  1:302878/149‑1 (MQ=255)                       aagaaCGCCAGTCGCGACGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGca                                                                                                                                           >  4:87387/1‑135 (MQ=255)                                       gtccaacagtacggtgtgttcaacatggcggcaggccccaatgagcagactatccccttcccggtgagctttcctaccgcatgcaggtatgtggggctgaccaacctggAGGATGCGCACAGTATTGCCCTCGGTCGCCGCATCCTCCa                                                                                                             >  2:338570‑M1/110‑149 (MQ=255)                                       gtccaacagtacggtgtgttcaacatggcggcaggccccaatgagcagactatccccttcccggtgagctttcctaccgcatgcaggtatgtggggctgaccaacctggAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCa                                                                                                             >  5:180030‑M1/110‑149 (MQ=255)                                       gtacaacagtacggtgtgttcaacatggcggcaggccccaatgagcagactatccccttcccggtgagctttcctaccgcatgcaggtatgtggggctgaccaacctggAGGATGCGCACAGTATTGCCCTCGGTCGCCGCATCCTCCa                                                                                                             >  2:333369‑M1/110‑149 (MQ=255)                                        cgtgCTGAACGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGGGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGCATGGTGACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAg                                                                                                            <  8:75660/146‑1 (MQ=255)                                        cGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAg                                                                                                            <  8:28390/149‑1 (MQ=255)                                          ggCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGt                                                                                                          >  6:319978/1‑149 (MQ=255)                                            cTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTg                                                                                                        <  1:204450/149‑1 (MQ=255)                                            cTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTg                                                                                                        <  1:125270/149‑1 (MQ=255)                                             tGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTgg                                                                                                       >  7:188087/1‑149 (MQ=255)                                             tGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTgg                                                                                                       >  4:108812/1‑149 (MQ=255)                                               aaGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTc                                                                                                     <  4:326273/149‑1 (MQ=255)                                                aGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGt                                                                                                      >  8:291418/1‑147 (MQ=255)                                                 ggAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAg                                                                                                   >  2:362799/1‑149 (MQ=255)                                                         ccATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCcaca                                                                                            >  2:76998/1‑148 (MQ=255)                                                         ccATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCcaca                                                                                            >  5:85312/1‑148 (MQ=255)                                                         ccATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACAt                                                                                           <  1:362799/149‑1 (MQ=255)                                                             acatggcggcaggccccaatgagcagactatccccttcccggtgagctttcctaccgcatgcaggtatgtggggctgaccaacctggAGGATGCGCACAGTATTGCCCTCGGCCGCCGCAtcctc                                                                                                               >  7:233276‑M1/88‑125 (MQ=255)                                                             acatggcggcaggccccaatgagcagactatccccttcccggtgagctttcctaccgcatgcaggtatgtggggctgaccaacctggAGGATGCGCACAGTATTGCCCTCGGCCGCCGCAtcctc                                                                                                               <  8:233276‑M1/38‑1 (MQ=255)                                                                   ttCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGc                                                                                 >  4:355019/1‑149 (MQ=255)                                                                      ccTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCgg                                                                               >  4:151491/1‑148 (MQ=255)                                                                      ccTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCgg                                                                               <  4:190937/148‑1 (MQ=255)                                                                       cTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCGAGGTTGGTCAGCCCCACATACCTGCATGCGGTa                                                                             <  3:151491/149‑1 (MQ=255)                                                                       cTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTa                                                                             <  1:76998/149‑1 (MQ=255)                                                                          tGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAg                                                                            <  6:85312/147‑1 (MQ=255)                                                                            gCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGaaa                                                                        <  8:188087/149‑1 (MQ=255)                                                                             cATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCGACATACCTGCATGCGGTAGGAAAg                                                                       <  3:108812/149‑1 (MQ=255)                                                                                 ccAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCa                                                                   >  8:70913/1‑149 (MQ=255)                                                                                    ggTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCg                                                                <  7:291418/149‑1 (MQ=255)                                                                                             ggTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGa                                                       <  5:319978/149‑1 (MQ=255)                                                                                              gTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGt                                                                                                          <  8:155860/97‑1 (MQ=255)                                                                                                        tACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCa                                            >  5:119439/1‑149 (MQ=255)                                                                                                              ccGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTg                                         >  8:328312/1‑146 (MQ=255)                                                                                                              ccGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTg                                         <  7:328312/146‑1 (MQ=255)                                                                                                                      aGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTgccgc                              >  1:53856/1‑149 (MQ=255)                                                                                                                       ggATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTgccgc                              >  7:33427/1‑148 (MQ=255)                                                                                                                        gATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCTGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCa                            >  3:239207/1‑149 (MQ=255)                                                                                                                          tGGTCACCGAAGAGGTCGTCCACCGCAGGATGCGCACAGTATTGCCCGCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATg                          <  3:272809/149‑1 (MQ=255)                                                                                                                             tCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGtt                        >  4:348622/1‑148 (MQ=255)                                                                                                                                ccGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTgg                                        <  6:51246/129‑1 (MQ=255)                                                                                                                                ccGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTgg                                        >  5:51246/1‑129 (MQ=255)                                                                                                                                    agagTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAacacac                <  3:348622/149‑1 (MQ=255)                                                                                                                                    agagTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAacacac                >  8:61014/1‑149 (MQ=255)                                                                                                                                        ttCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTa            >  1:54393/1‑149 (MQ=255)                                                                                                                                           gTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTg         >  3:162466/1‑149 (MQ=255)                                                                                                                                            tCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAGGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGt        >  6:302201/1‑149 (MQ=255)                                                                                                                                             ccACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTg                                                <  2:336164/108‑1 (MQ=255)                                                                                                                                             ccACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTg                                                >  1:336164/1‑108 (MQ=255)                                                                                                                                              cACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGtt       <  7:70913/148‑1 (MQ=255)                                                                                                                                                ccGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAGGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGTTGGa    <  5:302201/149‑1 (MQ=255)                                                                                                                                                  gCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGTTGGACt  <  8:33427/149‑1 (MQ=255)                                                                                                                                                   cAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGTTg      <  7:78397/144‑1 (MQ=255)                                                                                                                                                   cAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGTTg      >  8:78397/1‑144 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ATCGCACGGAACATCGGAATGGAAGAACGCCAGTCGCGACGGGCTGAAGGAGTACCCCATGATCAGTTCCCTTTGGCATGCCAGGTGTAGGCGGTTGAGGTGTTACCACCCGAGTTGAGGATGGTCACCGAAGAGTTCGTCCACCGCAGGATGCGCACAGTATTGCCCTCGGCCGCCGCATCCTCCAGGTTGGTCAGCCCCACATACCTGCATGCGGTAGGAAAGCTCACCGGGAAGGGGATAGTCTGCTCATTGGGGCCTGCCGCCATGTTGAACACACCGTACTGTTGGACT  >  NC_002947/4382989‑4383282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.