| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 1 (0.020) | 39 (0.700) +GCC |
33/254 | NT | 97.6% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 1 (0.020) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCC > NC_002947/5555461‑5555746 | cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACTCCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAgcg < 1:84481/148‑1 (MQ=255)cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGg > 3:166111‑M1/1‑148 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccc > 8:34022‑M1/1‑145 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccc > 7:126401‑M1/1‑145 (MQ=255) cACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCGAAAGGGCCGCCTAGCGgccccgg > 6:346697‑M1/1‑142 (MQ=255) tgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatt > 4:295672‑M1/1‑137 (MQ=255) tgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatt > 4:22439‑M1/1‑137 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttc > 2:229163‑M1/1‑135 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccgg > 6:154964‑M1/1‑135 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccgg < 5:154964‑M1/142‑8 (MQ=255) gAAATTGAGGTGGGCCTGGGCAGCGATTAGTCGGGCGGACATGCGCTACTCCTTTTGTGATGTGTCGCCGACAGCATAGCATCACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggaaatttcc < 2:264293‑M1/147‑16 (MQ=255) gCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaa < 7:34022‑M1/149‑31 (MQ=255) ggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctg > 1:223397‑M1/1‑114 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg < 8:126401‑M1/149‑37 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg < 2:302136‑M1/149‑37 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggg < 3:22439‑M1/149‑38 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggg < 1:229163‑M1/149‑38 (MQ=255) tAGTCGGGCTGACTTGAGCAACTAGTTTTGTCATGTGTCGCCGACAGAATAGGAACAGCTGTCAGGTGTGGTAGCGGGCTTGTGTCGCGAAAGTGCCGCATAGCGgccccggcaatttccgcgtgtatgaaacaaacctggggctggt < 2:223397‑M1/148‑44 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatg < 4:166111‑M1/149‑47 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACAACGCTCAGGTGTGGGAGCGGCCTTTTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctat < 6:164441‑M1/148‑46 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccg < 1:2891‑M1/108‑7 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccg > 2:2891‑M1/1‑102 (MQ=255) gggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca < 3:295672‑M1/148‑49 (MQ=255) cATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttc < 5:335790‑M1/149‑57 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcg > 5:131218‑M1/1‑90 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgcta > 3:263725‑M1/1‑87 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgcta < 4:263725‑M1/131‑45 (MQ=255) cTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 6:131218‑M1/149‑66 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGggcacgggaatttgcgcctgtatggaaaacaactggggctgctatgcagcccgttcgggccccaag > 6:287324‑M1/1‑83 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgt < 5:314803‑M1/100‑20 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgt > 6:314803‑M1/1‑81 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATAGCGgccccggcaatttacgcctgtatgcaacaaaccaggggcagcgatgcagcccattcgcgacacaaggc > 8:102936‑M1/1‑81 (MQ=255) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTAGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcc > 4:40825‑M1/1‑80 (MQ=255) gACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGTAGCCGAAGGGCCGCCAAGCGGGCCCCGCCAATTTCGCGGGTATGCAACAAACCAGGGGGAGGGATTCACCCCGTTAGCGGCAACAAGCCCCCAAAGGACCCCGCAg > 4:72809/1‑149 (MQ=255) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg > 4:223406‑M1/1‑53 (MQ=255) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg < 3:223406‑M1/89‑37 (MQ=255) aaCACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATAGCGgccccggcaatttacgcgtgtattcaacaaacctggggctgctatgcagcccgttagcgacacaagggccacaaaggaccgcgcaggcgtaaggccc > 1:211040‑M1/1‑52 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcc < 5:172879‑M1/146‑97 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAAGGCCGCATAGCGgccccggcaaattacgcgtgtatgcaacaaaccaggggcagctatgcagccctttctcgacacaagccccacaaaagaccgcgcaggcgtcaggccca > 6:172879‑M1/1‑50 (MQ=255) aGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctgcggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggc < 5:287324‑M1/148‑107 (MQ=255) aGGTGTGGGAGCGGCCTCGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactgg < 3:40825‑M1/147‑106 (MQ=255) tgGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccagg < 2:244127‑M1/148‑112 (MQ=255) cTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt > 3:79717‑M1/1‑27 (MQ=255) cTTGTGTCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt < 4:79717‑M1/117‑91 (MQ=255) tgtCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 7:102936‑M1/149‑127 (MQ=255) tgtCGCGAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagct > 6:126751‑M1/1‑23 (MQ=255) gcgAAAGGGCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagcc < 5:346697‑M1/148‑130 (MQ=255) gCCGCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatc > 8:123095‑M1/1‑11 (MQ=255) gCATAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcc < 7:123095‑M1/149‑142 (MQ=255) | CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCC > NC_002947/5555461‑5555746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |