New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6045035 =	46 (0.810)	6 (0.110)	4/246	NT	12.3%	coding (255/1608 nt)	PP_5297	amino acid transporter
	?	NC_002947	6045071 =	42 (0.780)					coding (219/1608 nt)	PP_5297	amino acid transporter

CGCCGATCCAGCCGATCATCGGGCCGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGTTGCCCGCGTCG  >  NC_002947/6044887‑6045179                                                                                                                                                     |                                                                                                                                                   caattacacagaagccggccgcccacccgatgtggcggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttcccccatcgccccggtctatcccctgaccg                                                                                                                                                    <  3:266846‑M1/1‑1 (MQ=255) caattacacagaagccggccgcccacccgatgtggcggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccg                                                                                                                                                    >  6:181857‑M1/149‑149 (MQ=255)       cacagaagccggccgcccacccgatgtggcggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGccc                                                                                                                                              <  5:157533‑M1/7‑1 (MQ=255)       cacagaagccggccgcccacccgatgtggcggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGccc                                                                                                                                              >  6:82954‑M1/143‑149 (MQ=255)       cacagaagccggccgcccacccgatgtggcggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGcc                                                                                                                                               >  3:334557‑M1/143‑148 (MQ=255)         cAGCCGATCATCGGGCCGAATGCACGCGACGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCACACGATGAACACGGCCGGCAGGTGGGAGCacac                                                                                                                                            >  6:260367/1‑149 (MQ=255)               atcatcGGGCCGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑cacg                                                                                                                                     <  6:281514/149‑1 (MQ=255)                  atcGGGCCGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTGCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑cacgca                                                                                                                                   <  6:326318/148‑1 (MQ=255)                   tcGGGCCGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑cacgcacg                                                                                                                                 <  7:63220/149‑1 (MQ=255)                   tcGGGCCGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGATCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑cccgcacg                                                                                                                                 >  8:235478/1‑149 (MQ=255)                        ccGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAgg                                                                                                                            >  2:205647/1‑149 (MQ=255)                                aCGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAggg                                                                                                                    >  6:183344/1‑149 (MQ=255)                                  gcgcCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGgcg                                                                                                                  >  8:288152/1‑149 (MQ=255)                                     ggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCg                                                                                                               >  6:87079‑M1/113‑149 (MQ=255)                                     ggccgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCg                                                                                                               >  6:92309‑M1/113‑149 (MQ=255)                                        cgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGt                                                                                                             <  5:328320‑M1/39‑1 (MQ=255)                                        cgacgcgggcaacactcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTc                                                                                                            >  6:328320‑M1/110‑149 (MQ=255)                                           aGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAgg                                                                                                         <  7:103069/149‑1 (MQ=255)                                            ggTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑cacgca                                                                                                                                   >  5:206117/1‑122 (MQ=255)                                            ggTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑cacgca                                                                                                                                   <  6:206117/122‑1 (MQ=255)                                              tAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGt‑a                                                                                                     <  7:288152/149‑1 (MQ=255)                                                       tcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGCCCACCTTCACGCACGGTAGGGCCAAGGGCGCCg                                                                                                               >  1:4418‑M1/95‑132 (MQ=255)                                                       tcagcgcagcaaaggcctggccaagggccgcttggggctgctggccagcgtggtgctgggcatttccaccatcgccccggtctataccctgaccGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCg                                                                                                               <  2:4418‑M1/37‑1 (MQ=255)                                                                 aGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGAtggtgg                                                                                  >  6:249911/1‑149 (MQ=255)                                                                     tCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAAt                                                                              >  5:82480/1‑149 (MQ=255)                                                                        gccgAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGAtg                                                                                      <  8:204416/138‑1 (MQ=255)                                                                        gccgAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGAtg                                                                                      >  7:204416/1‑138 (MQ=255)                                                                           gAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGTAATAGACCGGGGCGATGGTGGAAATGCCCa                                                                         <  1:205647/149‑1 (MQ=255)                                                                              ttCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGcac                                                                     >  1:279186/1‑149 (MQ=255)                                                                                  gCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCCCg                                                                 >  2:308493/1‑149 (MQ=255)                                                                                   cTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAg                                                                                                          >  7:220069/1‑108 (MQ=255)                                                                                   cTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAg                                                                                                          <  8:220069/108‑1 (MQ=255)                                                                                   cTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGc                                                                <  5:183344/149‑1 (MQ=255)                                                                                        gATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGt‑a                                                                                                     >  7:24538/1‑107 (MQ=255)                                                                                        gATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGt‑a                                                                                                     <  8:24538/107‑1 (MQ=255)                                                                                          tAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCcag                                                         <  7:235478/149‑1 (MQ=255)                                                                                              ccAGGGCCACCAGCAGCATCGGCAAGAAGCCCCCGATGAACACGGCCGGCAGGTGGGCGCCCCCCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGGGGAAATGCCCAGCACCACGCTGGCCagcagc                                                     >  1:227125/1‑149 (MQ=255)                                                                                              ccAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCagcagc                                                     >  8:101861/1‑149 (MQ=255)                                                                                              ccAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCagcagc                                                     >  5:356665/1‑149 (MQ=255)                                                                                                    ccaccaGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAg                                               <  1:308493/149‑1 (MQ=255)                                                                                                      accaGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCg                                             <  7:101861/149‑1 (MQ=255)                                                                                                      accaGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCg                                             >  7:62521/1‑149 (MQ=255)                                                                                                       ccaGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCgg                                            >  4:203667/1‑149 (MQ=255)                                                                                                          gcagcaTCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGccc                                         >  8:335170/1‑149 (MQ=255)                                                                                                              caTCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTgg                                     >  1:350875/1‑149 (MQ=255)                                                                                                                     aagaagCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGc                               <  2:350875/148‑1 (MQ=255)                                                                                                                              aCGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGcc                                                    <  8:164855/118‑1 (MQ=255)                                                                                                                              aCGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGcc                                                    <  8:169545/118‑1 (MQ=255)                                                                                                                              aCGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGcc                                                    >  7:169545/1‑118 (MQ=255)                                                                                                                              aCGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGcc                                                    >  7:164855/1‑118 (MQ=255)                                                                                                                                gATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCt                   >  5:185489/1‑149 (MQ=255)                                                                                                                                  tGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGa                 <  3:203667/149‑1 (MQ=255)                                                                                                                                   gAACACGGCCGGCAGGTGGGCGCCCACGT‑CACGCACGGTAGGGCCAAGGGCGCCTGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGATGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGa                 <  5:260367/148‑1 (MQ=255)                                                                                                                                       acGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGtt            <  2:279186/149‑1 (MQ=255)                                                                                                                                          gccggcAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGTTGcc         <  7:335170/149‑1 (MQ=255)                                                                                                                                           ccggcAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGTTGccc        >  6:344838/1‑149 (MQ=255)                                                                                                                                              gcAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGTTGCCcgcg     >  7:91483/1‑149 (MQ=255)                                                                                                                                                 ggTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGTTGCCCGCGTCg  >  4:237868/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGCCGATCCAGCCGATCATCGGGCCGAATGCACGCGCCGACCAGGTAAACGAAGTACCGCTGTCAGGCTCCGCCGAGTTCAGCTCGCGATAGCCCAGGGCCACCAGCAGCATCGGCAAGAAGCCCACGATGAACACGGCCGGCAGGTGGGCGCCCACCT‑CACGCACGGTAGGGCCAAGGGCGCCGGTCAGGGT‑ATAGACCGGGGCGATGGTGGAAATGCCCAGCACCACGCTGGCCAGCAGCCCCAAGCGGCCCTTGGCCAGGCCTTTGCTGCGCTGAGTGTTGCCCGCGTCG  >  NC_002947/6044887‑6045179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.