New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	499204 =	26 (0.460)	3 (0.060)	3/232	NT	11.5%	intergenic (+48/‑248)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	499271 =	23 (0.460)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein

GAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  NC_002947/499126‑499418                                                                                                                                                  |                                                                                                                                                    atttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaacctgggggagcgggcatgcccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCt                                                                                                                                                  <  7:61331‑M2/4‑1 (MQ=255)     tACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGGTGATGTCTATGGCTGGGCCGGCCACTTAGCGGGCATGCCCGCTGCca                                                                                                                                              >  3:107663/1‑149 (MQ=255)          cATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCCAAACGGCCTGGCCAGCTGATCTCGATGGCGGAGCCGGCCTCTTAGCGGGCATGCCCGCTACCACAGGt                                                                                                                                         >  6:293321/1‑149 (MQ=255)             ggAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGGCTGGCCTGCTGATATCTATTGCTGAGCCGGCCTCTTAGCGGGGATGCCCGCTCCCACAGGTTTc                                                                                                                                      >  5:505/1‑149 (MQ=255)                      gCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTGGTTGTTGGc                                                                                                                             >  6:151825/1‑149 (MQ=255)                      gCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGc                                                                                                                             >  7:284328/1‑149 (MQ=255)                                    gACATACGGGGGCCCGAAACTTGCCCACGCCTATGGGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCGCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTc                                                                                                               <  5:151825/149‑1 (MQ=39)                                           gggTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATccc                                                                                                        <  8:284328/149‑1 (MQ=255)                                                           ccGAAGCCTATGTGGCAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCGGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAggg                                                                                         <  7:112536/148‑1 (MQ=255)                                                                           agcgGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCCCAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAAt                                                                        <  7:61331‑M1/145‑1 (MQ=255)                                                                                   TGCCCGCGAACGGGCCTGGCCTGCTTATCTCTATGGCTCAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATc                                                                >  7:201587‑M1/1‑149 (MQ=255)                                                                                    gcccgctaagtggccggctaagccatagagatcagcaggccaggcccgttggggggcatgccCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCt                                                                                 <  2:174871‑M2/69‑1 (MQ=255)                                                                                    gcccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCCCAGGGTTCGTGGTTGGCTCGCAAGGGCATTGCAATCCCGCCATCCTTGTAGGGCGATCCCt                                                                                 >  1:174871‑M2/63‑131 (MQ=255)                                                                                      ccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCACGCCATCCTTGTAGGGCGATACCTACAACAAATCTTCCATCCg                                                              >  4:121168‑M2/61‑148 (MQ=255)                                                                                          GAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATc                                                                                                          >  4:251973‑M1/1‑100 (MQ=255)                                                                                          GAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATc                                                                                                          <  3:251973‑M1/100‑1 (MQ=255)                                                                                              gggCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATgg                                                      >  1:36884/1‑148 (MQ=255)                                                                                                gcctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCAt                                                   >  8:50844/1‑149 (MQ=255)                                                                                                  ctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtc                                                 >  4:307556/1‑149 (MQ=255)                                                                                                       ctgctgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCACAAGGGCATTCCAATCCCGCCATCCTTGt                                                                                             >  2:63914/1‑100 (MQ=255)                                                                                                       ctgctgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCACAAGGGCATTCCAATCCCGCCATCCTTGt                                                                                             <  1:63914/100‑1 (MQ=255)                                                                                                       ctgctgATCTCTATGGATGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGTGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCa                                            <  5:293321/149‑1 (MQ=255)                                                                                                           tgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAc                                        >  3:83601/1‑149 (MQ=255)                                                                                                           tgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAc                                        >  5:112677/1‑149 (MQ=255)                                                                                                             aTCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAccc                                      >  6:357258/1‑149 (MQ=255)                                                                                                                 ctATGGCTCACCCGGCCTCTTCGCGGGCAAGCCCGCTACCACACCTTACGTCGAAGGCTCCCAAGGGCATTCCAATCCCGCCAACCTTCTAGGGCGATCCCAACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACACCCGa                                  >  4:96186/1‑149 (MQ=255)                                                                                                                  tATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGAt                                 >  3:336237/1‑149 (MQ=255)                                                                                                                  tATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCAACCACAGCTTTCGTGGTTGCCTCGCAAGGCCAATCCAAACCCGCCATCCTTCTATGGCGATCCAAACAACAAAACATCCATCAGGATCATCGCATAATCTCAGAACCCACgct                                 >  4:210282/1‑147 (MQ=255)                                                                                                                      gCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTc                             >  4:273376/1‑149 (MQ=255)                                                                                                                            ccGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgatga                                                         <  1:239945/115‑1 (MQ=255)                                                                                                                            ccGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgatga                                                         >  2:239945/1‑115 (MQ=255)                                                                                                                                ccTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGc                   >  1:45615/1‑149 (MQ=255)                                                                                                                                      cgcgggcatgccCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGtctc              <  5:357258‑M2/136‑1 (MQ=255)                                                                                                                                      cgcgggcatgccCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGtctc              <  3:273376‑M2/136‑1 (MQ=255)                                                                                                                                       gcgggcatgccCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCtctt            <  7:50844‑M2/138‑1 (MQ=255)                                                                                                                                                 cCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCtttt  <  4:336237‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  NC_002947/499126‑499418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.