New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	931357 =	47 (0.830)	5 (0.090)	5/246	NT	11.1%	coding (14265/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	931394 =	36 (0.670)					coding (14228/18933 nt)	PP_0806	surface adhesion protein

GCTGCCGTCGGCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCC  >  NC_002947/931246‑931537                                                                                                                                                     |                                                                                                                                                tgtcaccctcaccggccgcggcgaagtgggcgcacgggttaccgtgaccaacccggcaggcgaggaaatcggcagcgcgaccgtcgatgccagtggccacttcaccatcacGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCg                                                                                                                                                 >  5:194697‑M1/112‑149 (MQ=255) gCTGCCGTCGGCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCg                                                                                                                                                 <  5:94064/149‑1 (MQ=255)   tcaccctcaccggccgcggcgaagtgggcgcacgggttaccgtgaccaacccggcaggcgaggaaatcggcagcgccaccgtcgatgccagtggccacttcaccatcacGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTg                                                                                                                                               >  1:84956‑M1/110‑149 (MQ=255)     ccGTCGGCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGAt                                                                                                                                             >  8:106059/1‑149 (MQ=255)     ccGTCGGCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGAt                                                                                                                                             <  5:293051/149‑1 (MQ=255)       gTCGGCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATgg                                                                                                                                           >  4:5147/1‑149 (MQ=255)           gCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTg                                                                                                                                         >  3:281631/1‑147 (MQ=255)           gCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGaa                                                                                                                                       <  2:133116/149‑1 (MQ=255)           gCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGaa                                                                                                                                       <  3:157279/149‑1 (MQ=255)             gTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGt                                                                                                                                     <  4:281631/149‑1 (MQ=255)                 aTCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTgg                                                                                                                                   >  1:61007/1‑147 (MQ=255)                 aTCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTgg                                                                                                                                   <  2:61007/147‑1 (MQ=255)                  tCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGcc                                                                                                                                 >  3:193668/1‑148 (MQ=255)                     ccacTTGGGTGAGTGGGTCGGGCGGGGTTAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTg                                                                                                                             <  7:62050/149‑1 (MQ=255)                     ccacTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTg                                                                                                                             >  8:62050/1‑149 (MQ=255)                      cacTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCGCAGCGTGATGGTGAAGTGGCCACTgg                                                                                                                            >  5:179936/1‑149 (MQ=255)                                  gggggCGGGGGGGGTGAAGGCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTg                                                                                                                 <  8:328279/147‑1 (MQ=255)                                     gTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTTGCCACTGGCATCGACGGTGtcgc                                                                                                             >  6:72180/1‑149 (MQ=255)                                            ggggTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGAt                                                                                                      <  3:283518/149‑1 (MQ=255)                                                 gAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCt                                                                                                 <  7:106059/149‑1 (MQ=255)                                                 gAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCt                                                                                                 >  8:13744/1‑149 (MQ=255)                                                  aaGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTc                                                                                                >  1:174518/1‑149 (MQ=255)                                                         gggTTTGCAGTGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCAGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGcc                                                                                         <  5:72180/149‑1 (MQ=255)                                                               gCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGtt                                                                                    <  7:345677/148‑1 (MQ=255)                                                                          aCTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCgg                                                                                       >  3:325949/1‑134 (MQ=255)                                                                          aCTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCgg                                                                                       <  4:325949/134‑1 (MQ=255)                                                                              ccGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGt                                                                    <  3:5147/149‑1 (MQ=255)                                                                                     gTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCggg                                                                                      >  4:204451/1‑124 (MQ=255)                                                                                     gTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCggg                                                                                      <  3:204451/124‑1 (MQ=255)                                                                                         ccggccgCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTc                                                         >  1:65182/1‑149 (MQ=255)                                                                                            gccgCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTcgcc                                                      <  4:193668/149‑1 (MQ=255)                                                                                               gCATCGGCCTGGGTGAAGCGTCGCCGCGCGGCGGTGCCCAGTGCCGGGCGCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCcgcg                                                   <  7:117012/149‑1 (MQ=255)                                                                                                 aTCGGCCTGGGTGAAGCGTAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGc                                                 <  6:98269/149‑1 (MQ=255)                                                                                                     gCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGt                                             >  3:212277/1‑149 (MQ=255)                                                                                                        tGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAg                                          >  3:303578/1‑149 (MQ=255)                                                                                                        tGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAg                                          >  4:241557/1‑149 (MQ=255)                                                                                                        ggggTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCGCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAg                                          <  6:13080/148‑1 (MQ=255)                                                                                                          ggTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAggg                                        >  6:304520/1‑149 (MQ=255)                                                                                                             gAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGa                                     <  2:174518/149‑1 (MQ=255)                                                                                                             cacgctgagcccggcactgggcaacgccgagctgctcagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGa                                     >  1:84956‑M2/41‑149 (MQ=255)                                                                                                               cgctgagcccggcactgggcaacgccgagctgctcagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTCGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGaca                                   >  5:194697‑M2/39‑149 (MQ=255)                                                                                                                gctgagcccggcactgggcaacgccgagctgctcagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCgg                                                  >  6:330977‑M2/38‑133 (MQ=255)                                                                                                                gctgagcccggcactgggcaacgccgagctgctcagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCgg                                                  <  5:330977‑M2/96‑1 (MQ=255)                                                                                                                GCTGAGCAGCTCGGCTTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGTTTTCCGCGCCTGCCGGGTTGGTCACGTTAACCCGTGCGCCCACTTCGCCGCGGCCGTTGAGGGTGacac                                  >  4:285300‑M1/1‑149 (MQ=255)                                                                                                                    agcccggcactgggcaacgccgagctgctcagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTCGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCAt                               <  6:194697‑M2/115‑1 (MQ=255)                                                                                                                      CAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCAc                            <  2:16371‑M1/149‑1 (MQ=255)                                                                                                                         cTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCg                          >  3:52611/1‑148 (MQ=255)                                                                                                                                ttGCCCAGTGCCGGGCTCAGCGTGATTGTGAATGGGCCACTGGAATCGACGGTGGCGCTGCATATTTCCTCGCATTCCGGGTTGGTCAAGGTAACCCGTTCGCACACTTAGCCGCGGACGTTGAGGGGGAAACCATCACCTGAAACGGc                  <  7:10347/149‑1 (MQ=255)                                                                                                                                           cGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACGCGTGCGCCCACATCGCCGCGGCCg                                               <  1:22457/109‑1 (MQ=255)                                                                                                                                           cGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCTGCCg                                               >  2:22457/1‑109 (MQ=255)                                                                                                                                           cGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGGTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCgg       <  7:13744/149‑1 (MQ=255)                                                                                                                                                tcagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGcc  >  2:84095‑M2/6‑149 (MQ=255)                                                                                                                                                 cagcGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGcc  >  4:285034‑M2/5‑148 (MQ=255)                                                                                                                                                     gTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTg    >  7:93927/1‑142 (MQ=255)                                                                                                                                                     gTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTg    <  8:93927/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                GCTGCCGTCGGCGTTGATCACCACTTGGGTGAGTGGGTCGGGCGGGGTGAAGTCCGGGGTTTGCAGGGTAGCCACTGCCGACACGTTGCCGGCCGCATCGGCCTGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCC  >  NC_002947/931246‑931537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.