| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 967108 = | 52 (0.920) | 3 (0.060) | 3/240 | NT | 6.3% | coding (74/297 nt) | PP_0829 | hypothetical protein |
| ? | NC_002947 | 967158 = | 41 (0.780) | coding (124/297 nt) | PP_0829 | hypothetical protein | |||||
AGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGT > NC_002947/967012‑967306 | aGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCa > 4:251184/1‑148 (MQ=255) cttcgcgccagggctcagcgccttgtacaggctttctctacccagcccactctccgtagcaatatgtgtcatgccccgtgcacgagcgatatgGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATc > 6:185181‑M1/94‑149 (MQ=255) aaGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTg < 3:251184/147‑1 (MQ=255) aaGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCa > 7:41080/1‑149 (MQ=255) aaGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCa > 8:20759/1‑149 (MQ=255) agaTGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACggg < 2:171662/149‑1 (MQ=255) aTGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACgggg > 2:27946/1‑148 (MQ=255) aaTGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAATTCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGa > 8:312403/1‑149 (MQ=255) aaTGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGAACTTGGCCATATCGCTCGTGAACGGGGCATGa > 1:169451/1‑149 (MQ=255) gCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGa < 5:264371/144‑1 (MQ=255) gCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGa > 6:264371/1‑144 (MQ=255) gAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACatat < 7:20759/149‑1 (MQ=255) aaaaaTTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATAtt > 1:277447/1‑149 (MQ=255) cGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGga > 2:354686/1‑145 (MQ=255) cGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGga < 1:354686/145‑1 (MQ=255) tGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTggg < 2:178117/148‑1 (MQ=255) gCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTggg > 4:281194/1‑146 (MQ=255) cAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTaga < 3:281194/149‑1 (MQ=255) aGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTggg > 2:61654/1‑144 (MQ=255) aGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTggg < 1:61654/144‑1 (MQ=255) gCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTagag > 4:146277/1‑148 (MQ=255) ccTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCACGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAgaga > 1:265610/1‑148 (MQ=255) gttgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGc < 1:27946/148‑1 (MQ=255) gttgAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGc < 2:3870/148‑1 (MQ=255) agcagcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGt < 8:41080/148‑1 (MQ=255) cagcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTAc > 8:14132/1‑148 (MQ=255) gcGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAg > 3:323956/1‑149 (MQ=255) aGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCt < 2:277447/148‑1 (MQ=255) gCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTATAGAAAGCCTGTACAAGGCGCTGAg < 7:312403/149‑1 (MQ=255) tGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGgcg > 2:278492/1‑149 (MQ=255) gatatggccaagtgctcgaatgatttcctcggtatcgccatctgatagcacttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAg > 6:185181‑M2/57‑149 (MQ=255) cTTAGCCAAGTGCTATCTGATGGCGATACCGAGTAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGTGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGcc < 2:169451/149‑1 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTTGGTAGAGAAAGCCTGTACACGGCGATGAGCCCTGGCGCGAAgac > 4:257708/1‑147 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGcc > 3:79794/1‑149 (MQ=255) cTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGcc < 1:278492/149‑1 (MQ=255) ttAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCt > 6:239311/1‑149 (MQ=255) gccaagtgctcgaatgatttcctcggtatcgccatctgatagcacttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGt > 7:153653‑M2/51‑149 (MQ=255) CCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGCCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGc > 8:74252‑M1/1‑112 (MQ=255) CCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGCCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGc < 7:74252‑M1/112‑1 (MQ=255) caagtgctcgaatgatttcctcggtatcgccatctgatagcacttggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGttt > 3:318902‑M2/49‑149 (MQ=255) tCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTg > 1:278268/1‑148 (MQ=255) cAGATGGCGATACAGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGt < 4:323956/148‑1 (MQ=255) ggCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAGGCCTGGACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTGTGCCACGGTATTGAg > 4:242783/1‑149 (MQ=255) ggCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGa < 3:242783/148‑1 (MQ=255) gAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCg > 2:154067/1‑149 (MQ=255) caaaTCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAgg < 2:32640/137‑1 (MQ=255) cATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCg < 3:299110/141‑1 (MQ=255) cATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCg > 4:299110/1‑141 (MQ=255) aTTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGga < 1:106968/56‑1 (MQ=255) aTTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGga > 2:106968/1‑56 (MQ=255) aTTCGAGCACTGGGCCATATCGCTCGGGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTggg < 3:257708/149‑1 (MQ=255) ggcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTtc < 8:153653‑M2/145‑1 (MQ=255) gcCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTtctc < 1:154067‑M2/147‑1 (MQ=255) cATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGt > 1:149009/1‑149 (MQ=255) | AGAAAGCTGCTGAAGGAGATGAAATGAGCGAAAAATTGATCCCGTTTGATATGGCAGCCTTGTTGAGCAGCGATGAGGCAATCAGTGAATACCTTAGCCAAGTGCTATCAGATGGCGATACCGAGGAAATCATTCGAGCACTTGGCCATATCGCTCGTGCACGGGGCATGACACATATTGCTACGGAGAGTGGGCTGGGTAGAGAAAGCCTGTACAAGGCGCTGAGCCCTGGCGCGAAGCCTCGTTTTGACACTGTATTGAGGGTCATTCGTGCTCTGGGGGTGGACCTTCTCGT > NC_002947/967012‑967306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |