New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1118155 | 45 (0.790) | 3 (0.060) | 3/250 | NT | 6.4% | coding (126/366 nt) | PP_0978 | hypothetical protein |
? | NC_002947 | = 1118189 | 45 (0.830) | coding (92/366 nt) | PP_0978 | hypothetical protein |
GCTTTCCAGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGTTCGCGG > NC_002947/1118041‑1118334 | gCTTTCCAGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCg > 6:21648/1‑149 (MQ=255) cTTTCCAGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTGCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGg > 6:315214‑M2/1‑148 (MQ=255) tCCAGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGgttg < 8:291922‑M2/149‑5 (MQ=255) cAGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGgttgc > 5:225747‑M2/1‑143 (MQ=255) aGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAg < 4:301177/149‑1 (MQ=255) aGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAg > 4:57256/1‑149 (MQ=255) agcagGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGc < 6:234735/149‑1 (MQ=255) cTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGt < 3:39034/140‑1 (MQ=255) cTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGt > 4:39034/1‑140 (MQ=255) cTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAagc < 3:57256/148‑1 (MQ=255) tCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATc > 6:210435/1‑149 (MQ=255) tCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTACAGGTCGGCGTCGCCAAGCAGCTGACGGATc > 2:84275/1‑149 (MQ=255) cTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATc > 1:353410/1‑148 (MQ=255) gCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGAc > 6:229209/1‑141 (MQ=255) gCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGAc < 5:229209/141‑1 (MQ=255) cGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCg < 4:124431/110‑1 (MQ=255) cGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCg > 3:124431/1‑110 (MQ=255) tcgtcCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAg < 7:291922/149‑1 (MQ=255) ggCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTACAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAg < 1:84275/149‑1 (MQ=255) cTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACACGAGGTCATCGAg > 8:113664/1‑147 (MQ=255) tCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAg > 4:183885/1‑146 (MQ=255) cAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATgg > 3:288128/1‑149 (MQ=255) ccGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGCCTCGAGGTCATCGAGCAGATGGGCGGaa > 6:21759/1‑149 (MQ=255) ccGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGaa > 4:299105/1‑149 (MQ=255) gggCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCa > 1:169141/1‑146 (MQ=255) aTCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGTGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGt > 5:161866/1‑149 (MQ=255) cggcTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCAtcgtc < 3:299105/149‑1 (MQ=255) cggcTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGGCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGATGGCTTGTCCAtcgtc < 8:346055/149‑1 (MQ=255) cTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATcgtcgt > 7:79709/1‑148 (MQ=255) ttCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATcgtcgt < 4:184303/147‑1 (MQ=255) ttCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATcgtcgt > 3:184303/1‑147 (MQ=255) gTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGgttgctgctggacgaagccgccagcgatcccgcggcgcccgcagaaccggtagctgccgagcccgaggacgacccgcagacccgccgccaggacaccctgct < 3:234611‑M2/149‑103 (MQ=255) gTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAg > 4:338687/1‑149 (MQ=255) cagcatCAAAGGAATATGCTCTACCGTCTCGGTGAGCATTGGCGGTTTCAGGTCTGCTTCGCCAAGCAGCTGACGTATCGACTCGATGTAATCTAGCAGATTGGCTGAAtagt < 7:157157/113‑4 (MQ=255) agcagcAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGc < 4:288128/149‑1 (MQ=255) agcagcAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGc > 8:38307/1‑149 (MQ=255) agcaACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTg > 8:207745/1‑148 (MQ=255) caACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCtt < 4:149996/123‑1 (MQ=255) aCGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGc > 6:13419/1‑149 (MQ=255) cGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGgttgctgctggacgaagccgccagcgatcccgcggcgcccgcagaaccggtagctgccgagcccgaggacgacccgcagacccgccgccaggacaccctgctgcacctggaaa > 6:288100‑M2/1‑35 (MQ=255) cGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGgttgctgctggacgaagccgccagcgatcccgcggcgcccgcagaaccggtagctgccgagcccgaggacgacccgcagacccgccgccaggacaccctgctgcacctgga < 5:288100‑M2/146‑112 (MQ=255) aaTCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCggtg < 5:13419/149‑1 (MQ=255) aaTCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCggtg < 3:338687/149‑1 (MQ=255) aTCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCggtg < 2:169141/148‑1 (MQ=255) ctctACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCggtggt < 3:183885/145‑1 (MQ=255) ctctACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTc < 5:210435/146‑1 (MQ=255) tACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTg > 1:349820/1‑146 (MQ=255) ccGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCagag < 2:353410/149‑1 (MQ=255) ccGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCagag > 1:320611/1‑149 (MQ=255) tctcGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAACAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCa > 2:26991/1‑148 (MQ=255) gAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTg > 6:23941/1‑149 (MQ=255) aGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTc < 3:151709/130‑1 (MQ=255) aGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTc > 4:151709/1‑130 (MQ=255) cAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGtt < 8:79709/148‑1 (MQ=255) gTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAACAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGTTcgc < 1:26991/149‑1 (MQ=255) gTGGCGGTTGCAGGTCGGCGTAGCCAAGCCGCTGAAGGATCGACTACAGGACCTCGAGGAGATGCGCGGAATCGGGAAAAGAGGAGGGCTTGTCGATCGTCTTCAAAGACGCGGTTAGCGCTGGGCTTGCATAGCATAGCCCGGATcgc > 2:316956/1‑149 (MQ=255) tGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGTTcgcg > 8:118489/1‑149 (MQ=255) tGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGTTcgcg < 6:58017/149‑1 (MQ=255) gCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGTTCGCgg < 7:113664/148‑1 (MQ=255) | GCTTTCCAGGTGCAGCAGGGTGTCCTGGCGGCGGGTCTGCGGGTCGTCCTCGGGCTCGGCAGCTACCGGTTCTGCGGGCGCCGCGGGATCGCTGGCGGCTTCGTCCAGCAGCAACGGAATCTGCTCTACCGTCTCGGTGAGCAGTGGCGGTTGCAGGTCGGCGTCGCCAAGCAGCTGACGGATCGACTCGAGGTCATCGAGCAGATGGGCGGAATCGGGCAAAGAGGAGGGCTTGTCCATCGTCGTCAAAGTCGCTGTAAGCGGTGGTCTTGCAGAGCATAGCCCTGTTCGCGG > NC_002947/1118041‑1118334 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |