New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1647433 =	55 (0.970)	3 (0.060)	3/248	NT	6.0%	coding (1289/1335 nt)	oprB‑II	carbohydrate‑selective porin
	?	NC_002947	1647473 =	42 (0.780)					coding (1249/1335 nt)	oprB‑II	carbohydrate‑selective porin

CTTCCTTGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGTTGACCAGGCGGGCGTTCTTGCGATAGG  >  NC_002947/1647328‑1647619                                                                                                                                                  |                                                                                                                                                   cTTCCTTGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTggg                                                                                                                                                 <  4:312125/149‑1 (MQ=255)    ccTTGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTgggg                                                                                                                                                <  4:174091/147‑1 (MQ=255)    ccTTGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATATACTGCAGGTTGGGGCg                                                                                                                                              >  8:326439/1‑149 (MQ=255)      ttGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTgg                                                                                                                                                  <  1:131427/143‑1 (MQ=255)      ttGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTgg                                                                                                                                                  >  2:131427/1‑143 (MQ=255)      ttGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTa                                                                                                                                            >  3:110270/1‑149 (MQ=255)        ggTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTAcc                                                                                                                                          >  2:88230/1‑149 (MQ=255)        ggTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATATACTGCAGGTTGGGGCGTAc                                                                                                                                           <  7:326439/148‑1 (MQ=255)                  ttCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGt                                                                                                                                >  3:58910/1‑149 (MQ=255)                     aGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCgg                                                                                                                             >  2:230819/1‑149 (MQ=255)                       tGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGc                                                                                                                            >  5:181624/1‑148 (MQ=255)                        gCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGcc                                                                                                                           >  4:175193/1‑148 (MQ=255)                         cTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGcc                                                                                                                           >  3:358354/1‑147 (MQ=255)                            tgccagtgcaggacaccgagtacagcgccgagctgtattacggcattcacttggccgactggctcacggtacgccccaACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTg                                                                                                                                                   >  7:162174‑M1/79‑120 (MQ=255)                            tgccagtgcaggacaccgagtacagcgccgagctgtattacggcattcacttggccgactggctcacggtacgccccaACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTg                                                                                                                                                   <  8:162174‑M1/42‑1 (MQ=255)                            aTCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGt                                                                                                                       >  4:285262/1‑148 (MQ=255)                               gTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCAGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAAt                                                                                                                   >  1:243225/1‑149 (MQ=255)                                  ggTTCTCCGTCAGGTCAAAAAAGGGGTAAGAAACTGCTCTGGAGCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACCCCCCGCCGGGGGGGGGTATGTACTGCAGGTTGCGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGc                                                                                                                 <  1:230819/148‑1 (MQ=255)                                   gTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCg                                                                                                               <  7:307813/149‑1 (MQ=255)                                          gTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATa                                                                                                          >  2:239732/1‑147 (MQ=255)                                               gTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCg                                                                                                   >  1:196937/1‑149 (MQ=255)                                               gTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCg                                                                                                   >  2:254918/1‑149 (MQ=255)                                                       aGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTa                                                                                           <  3:175193/149‑1 (MQ=255)                                                           gTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCg                                                                                       <  6:181624/149‑1 (MQ=255)                                                                aaaCTGCTCTGGATGTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGTTGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACCGCTCGGCGCTGTACTCGGTGTc                                                                                  <  7:229412/149‑1 (MQ=255)                                                                   cTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTg                                                                               <  8:54170/149‑1 (MQ=255)                                                                      ctctGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGc                                                                              <  2:308146/147‑1 (MQ=255)                                                                      ctctGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGc                                                                              <  2:196937/147‑1 (MQ=255)                                                                       tctGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACt                                                                           >  5:233880/1‑149 (MQ=255)                                                                        ctGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTg                                                                          >  6:152694/1‑149 (MQ=255)                                                                           gATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCa                                                                       <  1:254918/149‑1 (MQ=255)                                                                           gATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCa                                                                       <  6:44297/149‑1 (MQ=255)                                                                                tCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAg                                                                  >  8:211025/1‑149 (MQ=255)                                                                                      cgccgATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTCTCCTGCACTGGCAGGAAGCCCggg                                                            >  6:259207/1‑149 (MQ=255)                                                                                       gccgATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGt                                                           >  8:310803/1‑149 (MQ=255)                                                                                           aTCAGGGCGCCATCGACCTGCGACACCCCGCGCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTc                                                       <  1:362064/149‑1 (MQ=255)                                                                                            tCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCg                                                      <  5:152694/149‑1 (MQ=255)                                                                                               gggCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAg                                                   >  3:216155/1‑149 (MQ=255)                                                                                                ggCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGt                                                  >  4:129771/1‑149 (MQ=255)                                                                                                  cgcCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCgt                                                             <  8:6792/136‑2 (MQ=255)                                                                                                  cgcCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCga                                                             >  7:6792/1‑135 (MQ=255)                                                                                                    ccATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATa                                              <  4:110270/149‑1 (MQ=255)                                                                                                        caacctgcagtacatccgccacccgggcggggtgtcgcaggtTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCa                                                                       <  8:162174‑M2/78‑1 (MQ=255)                                                                                                        caacctgcagtacatccgccacccgggcggggtgtcgcaggtTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCa                                                                       >  7:162174‑M2/43‑120 (MQ=255)                                                                                                         gACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGCCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGc                                         <  1:239732/149‑1 (MQ=255)                                                                                                            ctgcagtacatccgccacccgggcggggtgtcgcaggtTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCcgg                                      >  5:328611‑M2/39‑149 (MQ=255)                                                                                                               CGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCcggcg                                    >  7:211025‑M1/1‑148 (MQ=255)                                                                                                                     cccgcccgGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTggg                             >  4:254934/1‑148 (MQ=255)                                                                                                                     cccgcccgGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGt                             >  7:291048/1‑149 (MQ=255)                                                                                                                       cgcccgGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGtt                            >  4:1959/1‑148 (MQ=255)                                                                                                                                  cGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGTTGACCAggcgggc                <  3:184499/149‑1 (MQ=255)                                                                                                                                  cGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGCTTGACCAggcgggc                <  7:310803/149‑1 (MQ=255)                                                                                                                                       gTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGTTGACCAGGCGGGCGTTc            <  6:233880/148‑1 (MQ=255)                                                                                                                                        tACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGACTGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCGGGACTGGCAGGAAGCCCGGGTTGTCGTTGTCATAGAGGCCGGCGGCCTGGTTGACCAGGCGGGCGTTCtt          <  5:259207/149‑1 (MQ=255)                                                                                                                                        tACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGTTGACCAGGCGGGCGTTCtt          <  8:291048/149‑1 (MQ=255)                                                                                                                                                gtTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGTTGACCAGGCGGGCGTTCTTGCGATAgg  >  8:311818‑M2/3‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CTTCCTTGGTTCGCACCTTCAGTGCTCATCGTAGGTTCTCCGTCAGGTCAAAAAAGGGGTTAGAAACTGCTCTGGATCTTCAGGCCGCCGATCAGGGCGCCATCGACCTGCGACACCCCGCCCGGGTGGCGGATGTACTGCAGGTTGGGGCGTACCGTGAGCCAGTCGGCCAAGTGAATGCCGTAATACAGCTCGGCGCTGTACTCGGTGTCCTGCACTGGCAGGAAGCCCGGGTTGTCGTAGTCATAGAGGCCGGCGGCCTGGTTGACCAGGCGGGCGTTCTTGCGATAGG  >  NC_002947/1647328‑1647619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.