New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1878358	46 (0.810)	3 (0.060)	3/250	NT	6.7%	coding (480/1221 nt)	PP_1684	transporter
	?	NC_002947	= 1878392	40 (0.730)					coding (514/1221 nt)	PP_1684	transporter

TTCTCGGTCATCCTCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTT  >  NC_002947/1878248‑1878540                                                                                                                                                 |                                                                                                                                                     ttCTCGGTCATCCTCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTcgg                                                                                                                                                   <  8:22779‑M2/148‑4 (MQ=255)   ctcGGTCATCCTCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTcgtcag                                                                                                                                                <  8:192621‑M2/149‑7 (MQ=255)       gTCATCCTCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGtt                                                                                                                                            >  2:165368/1‑149 (MQ=255)            ccTCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTgg                                                                                                                                       >  2:290869/1‑149 (MQ=255)              tCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTa                                                                                                                                     >  4:35175/1‑149 (MQ=255)                ggTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTAc                                                                                                                                    <  3:35175/148‑1 (MQ=255)                ggTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTAc                                                                                                                                    <  4:252309/148‑1 (MQ=255)                       tCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCtt                                                                                                                            <  1:133195/149‑1 (MQ=255)                         gggCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCtttt                                                                                                                          >  7:25540/1‑149 (MQ=255)                           gCGTGCAGTGCCGGGCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTg                                                                                                                                        >  7:309137/1‑133 (MQ=255)                           gCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTg                                                                                                                                        <  8:309137/133‑1 (MQ=255)                            cGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGTCACCCAAGGCCTGATTCAGTTGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCtttggtg                                                                                                                       <  7:170557/149‑5 (MQ=255)                            cGTGCAGTGCCGGCCGAAAAGCGCAGCAGGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTtggt                                                                                                                       <  8:232641/149‑1 (MQ=255)                                cAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCg                                                                                                                   >  1:175205/1‑149 (MQ=255)                                          cgAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGc                                                                                                         <  8:186578/149‑1 (MQ=255)                                          cgAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGc                                                                                                         >  2:215944/1‑149 (MQ=255)                                          cgAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGc                                                                                                         <  1:165368/149‑1 (MQ=255)                                            aaaaGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCt                                                                                                       <  4:292348/149‑1 (MQ=255)                                            aaaaGCGCAGCATCGCCATGGGGATCGCCAGCGCCGCCGGGTCGATCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCCGCAGCGTTGCTGGTACTGGCCCGTATGGTGGCGTTCATCATGcc                                                                                                        >  7:332481/1‑148 (MQ=255)                                               aGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTc                                                                                                    <  1:290869/149‑1 (MQ=255)                                                gcgcAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCg                                                                                                            <  1:132176/140‑1 (MQ=255)                                                gcgcAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCg                                                                                                            >  2:132176/1‑140 (MQ=255)                                                gcgcAGCATGGCCATGGGGAGGGCCAGCGCCGCCGGGGCGGTGGGCCATGTCGCCATGTTGGCGGGGACCCAAGGCCTGTTTCAGTGGCTGGGCGGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCg                                                                                                   <  4:131706/149‑1 (MQ=255)                                                 cgcAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCgt                                                                                                  >  2:211606/1‑149 (MQ=255)                                                   cagcaTGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCgtct                                                                                                <  7:151751/149‑1 (MQ=255)                                                          gCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTctgc                                                                                          <  2:175205/148‑1 (MQ=255)                                                                  gATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATc                                                                                 <  1:211606/149‑1 (MQ=255)                                                                                ccgGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGt                                                                   >  6:60769/1‑149 (MQ=255)                                                                                       gTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGt                                                             <  7:192621/148‑1 (MQ=255)                                                                                       gTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGACTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTg                                                            >  1:44041/1‑149 (MQ=255)                                                                                            gCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAg                                                       <  5:60769/149‑1 (MQ=255)                                                                                                gTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGa                                                   <  1:215944/149‑1 (MQ=255)                                                                                                    gCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTcggcaacatggcgaactggccgaacgacccggcggcgctggcgatccccatggccatgctgcgcttttcggccggcactgcacgcccgaccacaccgaggat                                                <  2:291957‑M2/148‑103 (MQ=255)                                                                                                     ccATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTg                                              >  7:44345/1‑149 (MQ=255)                                                                                                         gTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGc                                           >  8:220270/1‑148 (MQ=255)                                                                                                            gCCGGGCACCCAAGGCCTGATTCAGTGGCTGGACTGGTcggcaacatggcgaactggccgaacgacccggcggcgctggcgatccccatggccatgctgcgcttttcggccggcactgcacgcccgaccacaccgagg                                                  <  6:51629‑M2/138‑101 (MQ=255)                                                                                                            gCCGGGCACCCAAGGCCTGATTCAGTGGCTGGACTGGTcggcaacatggcgaactggccgaacgacccggcggcgctggcgatccccatggccatgctgcgcttttcggccggcactgcacgcccgaccacaccgagg                                                  >  5:51629‑M2/1‑38 (MQ=255)                                                                                                             ccGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGgc                                      >  2:145688/1‑149 (MQ=255)                                                                                                                           ccTGATTCTGTGGCGGGGCGGGTCGGGAGCGTTGCTTGTACTGGGCCTTTTGGTGGCGTTCATCATGCCTTTGGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCGCGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGt                        <  8:332481/149‑1 (MQ=255)                                                                                                                           ccTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGt                        >  4:131413/1‑149 (MQ=255)                                                                                                                              gATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGTCCGTTACCCAGTCACGGCGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTgca                     <  7:22779/149‑1 (MQ=255)                                                                                                                               aTTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTgc                      <  2:44041/147‑1 (MQ=255)                                                                                                                                  cAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTgcacgca                 >  3:189821/1‑149 (MQ=255)                                                                                                                                       gctgggctggTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAgg                                       >  8:334594/1‑122 (MQ=255)                                                                                                                                       gctgggctggTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAgg                                       <  7:334594/122‑1 (MQ=255)                                                                                                                                         tgggctggTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGc          >  7:319421/1‑149 (MQ=255)                                                                                                                                              tggTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTg     >  1:15998/1‑149 (MQ=255)                                                                                                                                                 tCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGtt  >  3:196166/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TTCTCGGTCATCCTCGGTGTGGTCGGGCGTGCAGTGCCGGCCGAAAAGCGCAGCATGGCCATGGGGATCGCCAGCGCCGCCGGGTCGTTCGGCCAGTTCGCCATGTTGCCGGGCACCCAAGGCCTGATTCAGTGGCTGGGCTGGTCGGCAGCGTTGCTGGTACTGGGCCTTTTGGTGGCGTTCATCGTGCCTTTCGTCTGTCTGCTGCGCGATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTT  >  NC_002947/1878248‑1878540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.