New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3289791 = | 58 (1.020) | 3 (0.060) | 3/246 | NT | 5.4% | coding (823/1752 nt) | PP_2892 | hypothetical protein |
? | NC_002947 | 3289839 = | 50 (0.930) | coding (871/1752 nt) | PP_2892 | hypothetical protein |
TATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGCGG > NC_002947/3289692‑3289981 | aatgtcataccacagcccgacgttctggcgcggggccgacagttcggtttcccagccatagctgtggccttgtgggttgacccagtggcgggtccagttGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCaa > 4:275749‑M1/100‑149 (MQ=255) tttCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACt > 2:258869/1‑149 (MQ=255) tCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTg < 2:289528/148‑1 (MQ=255) cGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTgg < 3:254830/148‑1 (MQ=255) cGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGa > 4:141842/1‑149 (MQ=255) gAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGa < 5:335874/148‑1 (MQ=255) gAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGAc < 3:141842/149‑1 (MQ=255) gTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGt < 6:182654/149‑1 (MQ=255) cggcgCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGCCGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCca > 3:75278/1‑149 (MQ=255) tcgcCCACAGCAGCAGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCcac > 2:284785/2‑148 (MQ=255) gcgcCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCcaca < 3:344310/149‑1 (MQ=255) ttcggtttcccagccatagctgtggccttgtgggttgacccagtggcgggtccagttGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACt < 1:42007‑M1/52‑1 (MQ=255) ttcggtttcccagccatagctgtggccttgtgggttgacccagtggcgggtccagttGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACt > 2:42007‑M1/58‑109 (MQ=255) tgGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGc > 6:305524/1‑149 (MQ=255) gCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCTACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg < 5:122117/149‑1 (MQ=255) cGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTgg < 1:298853/118‑1 (MQ=255) cGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTgg > 2:298853/1‑118 (MQ=255) gaagaaGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTggg > 7:197391/1‑148 (MQ=255) gaagTCCCGTTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAAc < 4:212144/149‑1 (MQ=255) gTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCg > 2:352725/1‑148 (MQ=255) gTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCg > 8:56128/1‑148 (MQ=255) ccGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGTGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGaa < 1:284785/148‑1 (MQ=255) cGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTg < 4:221739/136‑1 (MQ=255) cGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTAGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTg > 8:297967/1‑149 (MQ=255) cGGTGGATGTTCATCTGGAAACCCGTAAACAACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTg > 3:221739/1‑136 (MQ=255) gTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTc < 4:111707/149‑1 (MQ=255) gTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTc < 7:56128/149‑1 (MQ=255) gTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTAGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTc < 7:297967/149‑1 (MQ=255) cATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCcgcg > 4:166282/1‑149 (MQ=255) cATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCcgag > 1:128246/1‑147 (MQ=255) aTCTGTAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg < 2:268109/125‑1 (MQ=255) aTCTGGAAAGCCGTAAACCACGCACCTTGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCgcgc < 7:144589/149‑1 (MQ=255) aTCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGccc > 7:236059/1‑144 (MQ=255) aTCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGccc < 8:236059/144‑1 (MQ=255) aTCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCgcgc < 1:352725/149‑1 (MQ=255) aTCTGCAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg > 1:268109/1‑125 (MQ=255) tGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCgcgc > 5:4840/1‑146 (MQ=255) gAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAg < 3:176993/147‑1 (MQ=255) ccGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCg < 8:197391/149‑1 (MQ=255) cGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGc > 8:108619/1‑131 (MQ=255) cGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGc < 7:108619/131‑1 (MQ=255) cGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCgg > 8:124404/1‑149 (MQ=255) gTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTg < 8:122920/112‑1 (MQ=255) gTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTg > 7:122920/1‑112 (MQ=255) aCGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGt < 3:166282/149‑1 (MQ=255) cGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTa < 1:258869/149‑1 (MQ=255) ccATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCGGAACGTCGGCCTGTGGTATGAc < 5:305524/149‑1 (MQ=255) agttggccttgccgcgcggcccgacgtcggtcgagaagcccaggccaaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGaa > 2:42007‑M2/53‑109 (MQ=255) agttggccttgccgcgcggcccgacgtcggtcgagaagcccaggccaaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGaa < 1:42007‑M2/57‑1 (MQ=255) tGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACAtt > 6:157096/1‑149 (MQ=255) tGGGCCTTGGCCTGGGCTGCTCGACCGACGTCTGGCCGCGCGGCAAG‑GACAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACAtt < 8:151604/149‑1 (MQ=255) ttggccttgccgcgcggcccgacgtcggtcgagaagcccaggccaaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGGCTGTGGTATGACAtt > 4:275749‑M2/51‑149 (MQ=255) GGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGTCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTc > 1:50635‑M1/1‑148 (MQ=255) TGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGaa > 4:119452‑M1/1‑100 (MQ=255) TGGCCTGGGCTTCTCGACCGACGTCGCGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGaa < 3:119452‑M1/100‑1 (MQ=255) tGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACccg > 2:44799/1‑149 (MQ=255) ctcGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGa > 3:317955/1‑149 (MQ=255) gaccgacGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGAcc > 6:159531/1‑148 (MQ=255) ggCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTgcgc < 7:124404/149‑1 (MQ=255) gcgcgGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGAc < 7:57342/109‑1 (MQ=255) gcgcgGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGAc > 8:57342/1‑109 (MQ=255) aaggccAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCcggcgg < 1:44799‑M2/143‑1 (MQ=255) | TATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAG‑GCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGCGG > NC_002947/3289692‑3289981 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |