New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4780792 | 57 (1.010) | 3 (0.060) | 3/244 | NT | 5.4% | coding (6522/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
? | NC_002947 | = 4780812 | 52 (0.980) | coding (6502/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
AGCAATTGCCAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGG > NC_002947/4780670‑4780960 | aGCAATTGCCAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCggtcg < 7:80531‑M2/148‑6 (MQ=255) aaTTGCCAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCggtcgaac < 6:150884‑M2/148‑9 (MQ=255) aTTGCCAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCggtcgaac < 5:263769‑M2/147‑9 (MQ=255) ccAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGaa < 8:80531/148‑1 (MQ=255) ccAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGATGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAg > 8:295022/1‑149 (MQ=255) aGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGt > 5:72337/1‑148 (MQ=255) cGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAg < 5:242526/149‑1 (MQ=255) tccgATCTCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGa < 3:334202/143‑1 (MQ=255) tccgATCTCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGa < 3:339440/143‑1 (MQ=255) gCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTg > 6:231342/1‑145 (MQ=255) atatCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATc < 5:339511/147‑1 (MQ=255) atatCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATc < 4:209498/147‑1 (MQ=255) aaaGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGa > 4:339440/1‑137 (MQ=255) aaaGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGa > 4:334202/1‑137 (MQ=255) aaaGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAgg < 5:78468/149‑1 (MQ=255) aaaGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAg < 6:72337/148‑1 (MQ=255) aaaGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAg < 3:237589/148‑1 (MQ=255) tGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCcagcag > 8:213559/1‑149 (MQ=255) tGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCcagcag > 7:2941/1‑149 (MQ=255) cGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCcagca < 6:187278/146‑1 (MQ=255) ggCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTgg > 7:144008/1‑149 (MQ=255) gCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTggc < 2:75309/149‑1 (MQ=255) gTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTggcgg > 8:290256/1‑148 (MQ=255) ggCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCAt < 7:295022/146‑1 (MQ=255) cGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATg < 6:263769/149‑1 (MQ=255) gATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATgg > 7:46714/1‑149 (MQ=255) tCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGc < 7:290256/149‑1 (MQ=255) tCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGCGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCgg < 2:353964‑M2/91‑3 (MQ=255) gCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTgca < 8:2941/149‑1 (MQ=255) gCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTgc < 5:150884/148‑1 (MQ=255) ccccGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTgcagc < 7:213559/147‑1 (MQ=255) ccccGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCAt < 7:276242/149‑1 (MQ=255) ccGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCt > 4:278955/1‑149 (MQ=255) gCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcg < 8:144008/149‑1 (MQ=255) ccAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCca < 8:255083/105‑1 (MQ=255) ccAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcggc > 6:150620/1‑149 (MQ=255) ccAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcggc > 4:136310/1‑149 (MQ=255) tACGGTTGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACGATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGGAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcggcgcggc < 3:92113/149‑1 (MQ=255) gTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCgtgt < 5:150620/149‑1 (MQ=255) gCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGc < 1:164543/148‑1 (MQ=255) cTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTggc > 6:214775/1‑102 (MQ=255) cTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTggc < 5:214775/102‑1 (MQ=255) ttGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTg > 3:210196/1‑149 (MQ=255) gCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGc < 7:258190/148‑1 (MQ=255) ggTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCa > 6:282010/1‑95 (MQ=255) ggTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCa < 5:282010/95‑1 (MQ=255) ttgttgAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCa < 5:231342/149‑1 (MQ=255) aGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACcaa > 2:219563/1‑149 (MQ=255) cATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGAc < 7:84539/144‑1 (MQ=255) cATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGAc > 8:84539/1‑144 (MQ=255) gCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTcgg > 2:167863/1‑149 (MQ=255) gCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTcgg < 1:167863/149‑1 (MQ=255) cTGTTCGACCATGACGCCTTTAGGCACACCggtcgaacaggccggcatgctcaacaaccagctgagcaagctaccgtacttgggcctgcggggcagcgacgtgatcgcccagacggcctcgcagagctttgatatcagcgtctggcaat < 3:101823‑M2/149‑120 (MQ=255) tGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTcggcgg > 2:295922/1‑149 (MQ=255) ttCGACCATGACGCCTTTAGGCACACCggtcgaacaggccggcatgctcaacaaccagctgagcaagctaccgtacttgggcctgcggggcagcgacgtgatcgcccagacggcctcgcagagctttgat < 7:122886‑M2/130‑104 (MQ=255) ttCGACCATGACGCCTTTAGGCACACCggtcgaacaggccggcatgctcaacaaccagctgagcaagctaccgtacttgggcctgcggggcagcgacgtgatcgcccagacggcctcgcagagctttgat > 8:122886‑M2/1‑27 (MQ=255) gACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGTCAGGTGCAGCATCTGTGACGGCGCGGCGTGTGCCTGCAACTGCTCCCAGACCAACAAGGTCGGCGGCGCtt > 4:318335/1‑149 (MQ=255) ccATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTg > 2:129971/1‑148 (MQ=255) ccTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTc < 3:278955/149‑1 (MQ=255) cacaCCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGGGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCg < 5:169609/149‑1 (MQ=255) acacCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGc > 8:183034/1‑149 (MQ=255) cGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGACGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTgg > 7:174428/1‑149 (MQ=255) | AGCAATTGCCAGACGCTGATATCAAAGCTCTGCGAGGCCGTCTGGGCGATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGG > NC_002947/4780670‑4780960 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |