New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5162570 =	38 (0.670)	4 (0.090)	3/208	NT	14.2%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162654 =	18 (0.400)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

CGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGACCCCGCCGAGC  >  NC_002947/5162516‑5162802                                                                                                                                           |                                                                                                                                                      cGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCGTTCCCCCACCCCCACGATAACCCCACCCCCTTAGAACAGTGCGGGTCAGGTGGGCGCCGGCCAACCCCCGGAAAGGCCGGaaa                                                                                                                                              >  8:42307/1‑147 (MQ=255) cGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCGTTACCCCGCCCCCAAGATTAACCCACCCCGTTAGTACAGTGCAGTGCCTGTGGGGGCCGGCACACCCGCGCAGCGGcccggaaa                                                                                                                                             >  8:47903/1‑143 (MQ=255)       cacccGGCGTTTCCCGCTTCTTTTTGCCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCGGGCCCGCCCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAagag                                                                                                                                                      <  5:107694/131‑1 (MQ=37)        aTCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCt                                                                                                                                      <  2:48744/149‑1 (MQ=255)                    ccGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAgc                                                                                                                          <  3:130431/148‑1 (MQ=255)                         tcttTTGGGCTGTGTGAAATGCGCCGGCCCCTGCGCGGGCTGGCCCGCTCCCCCCGTATCCCCACCCACCTTGAGAACTGGGCTGAACGTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTgc                                                                                                                    <  7:47903/149‑1 (MQ=255)                          cttTTTGTCTGTGTCAAATGCGCCGGCCCCTTCGCGGGCTTCCCCTCTCCCACTGTATCACCACAGACCTTGAGACCTGTGCTGTACCTGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTgc                                                                                                                    <  7:42307/148‑1 (MQ=38)                                         aaaTGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTAc                                                                                                     <  1:85196/148‑1 (MQ=255)                                         aaaTGCGCCGGCCCCTTCCCGGGCTTGCCCGCTCCCCCAGAAACACCACCTACCTTGAGAACTGTGCTGTACCTGTGGTAGCGGGAAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTAc                                                                                                     <  5:309656/148‑1 (MQ=255)                                                     cccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATAccc                                                                                        <  3:255166/149‑1 (MQ=255)                                                          ccgGGGCTTCCCCCCACCCAACGTAACACCACTCACTTTGAGACCTGGGCTGTACCTGTGGTAGGGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCa                                                                                    >  8:233914‑M1/4‑148 (MQ=255)                                                                   GCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGc                                                                          <  8:220017‑M1/149‑1 (MQ=255)                                                                     cgGCTCCCACTTTTTCCCCAAATACCTTTATAACTGTGCTTTACTTGTGGTTGGGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTc                                                                        >  1:345694‑M1/3‑149 (MQ=255)                                                                     cccctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGATTGCGCAGAATCACACTACCAAACCAATAACCCGCACCAAACGAGCt                                                                         >  8:45705‑M2/71‑148 (MQ=255)                                                                     CCGCTCCCACAGTATCACCACAGACCTTGATAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTc                                                                        >  1:228982‑M1/1‑149 (MQ=255)                                                                     CCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAAATCTG‑GCTTGCGCAGAATCACACTACCAATCGAATACCCCACACCAAACGAGCt                                                                         <  1:298393‑M1/148‑1 (MQ=255)                                                                     CCGCTCCCACAGTATCACCACAGACCTTGAGAAATGTGCTGTACCTGTGGGAGGGGGAAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCt                                                                         >  7:220017‑M1/1‑148 (MQ=255)                                                                         tcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAaca                                                                    >  5:370763‑M2/67‑149 (MQ=255)                                                                         TCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtgat                                                                                                                                   >  8:207786‑M1/1‑87 (MQ=255)                                                                         TCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtgat                                                                                                                                   <  7:207786‑M1/87‑1 (MQ=255)                                                                           ccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACg                                                                  >  7:232630‑M2/65‑149 (MQ=255)                                                                            cacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgctaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGc                                                                 <  7:45705‑M2/86‑1 (MQ=255)                                                                                     accacAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGc                                                        >  2:48737/1‑149 (MQ=255)                                                                                     accacAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCAACAAACGAGCTCAACACGCCCAACGAGc                                                        >  6:107672/1‑149 (MQ=255)                                                                                       cacaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCt                                                                                                                                      <  8:284953/70‑1 (MQ=255)                                                                                       cacaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCt                                                                                                                                      >  7:284953/1‑70 (MQ=255)                                                                                          aGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                                                           <  5:231624/125‑1 (MQ=255)                                                                                          aGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                                                           >  6:231624/1‑125 (MQ=255)                                                                                               ttGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAg                                              >  1:281595/1‑149 (MQ=255)                                                                                                     aCTGTGCTGTCCCTGGGGGAGCGGGCATGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTc                                           <  3:25527/146‑1 (MQ=255)                                                                                                       tgtgCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCt                                      >  3:287473/1‑149 (MQ=255)                                                                                                           cTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTa                                  >  7:78530/1‑149 (MQ=255)                                                                                                              atactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACa                                <  8:232630‑M2/119‑1 (MQ=255)                                                                                                                 ctgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTg                            >  7:263743‑M2/27‑149 (MQ=255)                                                                                                                 ctgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTg                            <  8:78530‑M2/123‑1 (MQ=255)                                                                                                                         gcgggcttgcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTATAGGTGGAAGGCa                     >  2:72292‑M2/19‑148 (MQ=255)                                                                                                                         gcgggcttgcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTATAGGTGGAAGGCa                     <  1:72292‑M2/130‑1 (MQ=255)                                                                                                                           gggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAAt                   >  8:13785‑M2/17‑148 (MQ=255)                                                                                                                            ggcaagcccgcgaagCGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAAtcc                 >  4:324679‑M2/16‑148 (MQ=255)                                                                                                                                    cgcgaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGAcccc         >  8:140963‑M2/8‑149 (MQ=255)                                                                                                                                       gaagAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGACCccgcc      <  5:142995‑M2/145‑1 (MQ=255)                                                                                                                                           agGCCGTAACAGGCGCATTATGAA‑TCAGCGCTTGCGCAGAATCAAACTACCAATCGAATAACCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGACCCCGCCGAGc  <  4:287473/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                      CGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAA‑TCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGACCCCGCCGAGC  >  NC_002947/5162516‑5162802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.