New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5320779	62 (1.090)	4 (0.070)	4/250	NT	6.9%	coding (136/801 nt)	PP_4682	TPR repeat‑containing protein
	?	NC_002947	= 5320876	48 (0.880)					coding (39/801 nt)	PP_4682	TPR repeat‑containing protein

TGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCCACAGGCTGCGCCGGCCGGCGGTTCGCTCCCGC  >  NC_002947/5320730‑5321021                                                                                                                                                   |                                                                                                                                                  tGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCAGCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCac                                                                                                                                                 >  8:85098‑M2/1‑147 (MQ=255) tGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCac                                                                                                                                                 <  1:71437‑M2/149‑3 (MQ=255)   cgcCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCacgg                                                                                                                                               >  6:193415‑M2/1‑145 (MQ=255)     ccTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCa                                                                                                                                             <  1:296797/149‑1 (MQ=255)           cGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAAc                                                                                                                                       <  7:262713/149‑1 (MQ=255)            ggTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACa                                                                                                                                      <  1:322953/149‑1 (MQ=255)            ggTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACa                                                                                                                                      <  2:269234/149‑1 (MQ=255)                ccGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCTAACGCCGTCACGGCAGGAAACAGCCa                                                                                                                                  <  4:91069/149‑1 (MQ=255)                 cGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCAc                                                                                                                                 <  2:71437/149‑1 (MQ=255)                      ttATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGtt                                                                                                                            <  7:216601/149‑1 (MQ=255)                          aGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCTGAATATTGCCACTCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTtcaca                                                                                                                        <  7:173138/149‑1 (MQ=255)                            ccACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTtcacat                                                                                                                       >  8:267447/1‑148 (MQ=255)                             cACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTtcacatca                                                                                                                     <  7:202754/149‑1 (MQ=255)                             cACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCCGGTGCTCGAATCGACCACCGGAATATTGCCAAGAGGGACGCTGGAGCAACCCTGGAGAACAGCCAACTCCGTAACGGCAGGAAACAGCAGCTTGTtcacatc                                                                                                                      >  5:174399/1‑148 (MQ=255)                              aCCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTtcacatca                                                                                                                     >  1:233473/1‑148 (MQ=255)                                ccgctcggCGGGTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTtcacat                                                                                                                       >  6:54935/8‑144 (MQ=255)                                ccgctcggCGGGTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTtcacat                                                                                                                       <  5:54935/137‑1 (MQ=255)                                ccgccgAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCacac                                                                                                                  <  5:189513/149‑1 (MQ=255)                                     gAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCtcat                                                                                                             <  7:267447/149‑1 (MQ=255)                                     gAGCGGTTGGCCGTCACGCGTTCGCTGCTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCtcat                                                                                                             <  1:329032/149‑1 (MQ=255)                                           ttGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATg                                                                                                        >  3:165049/1‑148 (MQ=255)                                           ttGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACACCTGGAGCACAGCCAACGCCGTCacggccaaccgctcggcgggtggctataacgccggcaccgcc                                                                                                         <  6:59002‑M2/147‑43 (MQ=255)                                              gCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCacggccaaccgctcggcgggtggctataacgcc                                                                                                                  >  7:265595‑M2/1‑102 (MQ=255)                                              gCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCacggccaaccgctcggcgggtggctataacgcc                                                                                                                  <  8:265595‑M2/135‑34 (MQ=255)                                                  tCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCtgt                                                                                                <  2:233473/149‑1 (MQ=255)                                                  tCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCAAAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCtgt                                                                                                >  7:11521/1‑149 (MQ=255)                                                    aCGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGc                                                                                              <  4:17438/149‑1 (MQ=255)                                                    aCGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGc                                                                                              <  4:239973/149‑1 (MQ=255)                                                      gcgTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGcc                                                                                                                                   <  3:15882/110‑1 (MQ=255)                                                      gcgTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGcc                                                                                                                                   >  4:15882/1‑110 (MQ=255)                                                        gTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTaa                                                                                          <  4:165049/149‑1 (MQ=255)                                                         ttCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAAt                                                                                         >  6:313760/1‑149 (MQ=255)                                                            gCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCa                                                                                      >  2:10146/1‑149 (MQ=255)                                                                        gcgGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTaa                                                                                          >  5:190731/1‑133 (MQ=255)                                                                        gcgGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTaa                                                                                          <  6:190731/133‑1 (MQ=255)                                                                            gTGCTCGAATCGACCACCTGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCAc                                                                                                                                 <  4:195941/90‑1 (MQ=255)                                                                            gTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCAc                                                                                                                                 >  3:195941/1‑90 (MQ=255)                                                                                  gAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAgg                                                                                                                                           <  7:81180/74‑1 (MQ=255)                                                                                  gAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAgg                                                                                                                                           >  8:81180/1‑74 (MQ=255)                                                                                   aaTCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCAt                                                                >  2:180158/1‑148 (MQ=255)                                                                                             cGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCt                                                      >  3:21187/1‑148 (MQ=255)                                                                                                  tatTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTggg                                                <  1:10146/149‑1 (MQ=255)                                                                                                        cACGCGGGACGCTGGAGCACCCCTGGAGCACGGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGc                                          >  5:161982/1‑149 (MQ=255)                                                                                                         aCGCCGGAAGCTGGAGCACCCCAGCAGAACAGCCAACGCCCTCACGGCAGCAAACAGCGACTTGTTCACATCACACCTCATCAATGCAGCAAGTCATAAATTCATCCAGCCTTTGACCCACACCATTACCGAATCTACTGTGTCCtcc                                          >  4:24899/1‑146 (MQ=255)                                                                                                          cgcgGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCacggccaaccgctcggcgggtggctataacgccggcaccgcccaggcgcagacgctgccggaggattccggtgtcaccgtgatgatcccgcagggcgcaggcgcttc                                        >  5:59002‑M2/1‑42 (MQ=255)                                                                                                              ggACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTcgccg                                    >  5:349196/1‑149 (MQ=255)                                                                                                                  gCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCcac                                <  1:227229/149‑1 (MQ=255)                                                                                                                  gCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCcac                                <  1:180158/149‑1 (MQ=255)                                                                                                                   cTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCca                                 >  7:100150/1‑147 (MQ=255)                                                                                                                   cTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGCGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTgg                                                 <  4:88411/131‑1 (MQ=255)                                                                                                                   cTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGCGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTgg                                                 >  3:88411/1‑131 (MQ=255)                                                                                                                         cACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCCACAGGCTgc                         <  8:11521/149‑1 (MQ=255)                                                                                                                            cccTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCCACAGGCTGCgcc                      >  2:261179/1‑149 (MQ=255)                                                                                                                             ccTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCCACAGGCTGCgccg                     >  8:207321/1‑149 (MQ=255)                                                                                                                                       aGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGAcc                                                                        >  6:272029/1‑88 (MQ=255)                                                                                                                                       aGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGAcc                                                                        <  5:272029/88‑1 (MQ=255)                                                                                                                                        gCCAACGCCGGCTCTGCATGAAAGAGCCGATTTTTCACATCAGAACTAATCAATTCAGCCTGTTCTTAATTAATCCATCCTTTGACCCAGTCCATTACCTATTCTACTGGGTCCTGCTCGCCTCCACAGGCTGCGCCGGCCGGCGGTTc          <  6:174399/149‑1 (MQ=255)                                                                                                                                         ccAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCCACAGGCTGCGCCGGCCGGCGGTTCg         >  2:198144/1‑149 (MQ=255)                                                                                                                                                 gTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGACCTGCTCGCCGCCACAGGCTGCGCCGGCCGGCGGTTCGCTcccac  >  5:372116/1‑146 (MQ=255)                                                                                                                                                   |                                                                                                                                                  TGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGCGGTTGGCCGTCACGCGTTCGCTGTTGGACACGCGGGTGCTCGAATCGACCACCGGAATATTGCCACGCGGGACGCTGGAGCACCCCTGGAGCACAGCCAACGCCGTCACGGCAGGAAACAGCCACTTGTTCACATCACACCTCATCAATGCAGCCTGTGCTTAATTCATCCAGCCTTTGACCCAGTCCATTACCGATTCTACTGGGTCCTGCTCGCCGCCACAGGCTGCGCCGGCCGGCGGTTCGCTCCCGC  >  NC_002947/5320730‑5321021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.