New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5914184	41 (0.720)	4 (0.090)	4/204	NT	11.3%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	31 (0.700)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase

CTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAC  >  NC_002947/5914076‑5914369                                                                                                                                                     |                                                                                                                                                  cTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCtgt                                                                                                                                                   <  7:133887/149‑1 (MQ=255)    gAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTAGCGGGCACCCCCCCGCCCGCAGGGTAATTTGGAAGGCTGAAGCCGGTGACTTACCGGTggg                                                                                                                                                <  7:307367‑M2/149‑4 (MQ=255)         cAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgg                                                                                                                                           >  8:83536‑M2/1‑141 (MQ=255)         cAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcg                                                                                                                                            >  2:173351‑M2/1‑141 (MQ=255)          aaCTGGTACCTGCATACCGTGTAAACGAAATCGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcggg                                                                                                                                          <  1:29697‑M2/149‑10 (MQ=255)           aCTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGGCCCCCCCCAGCCCCCGGGGAAATTAGAAAGCGGAAGCCGGTGCAGTAACAGTGGGAGCgggg                                                                                                                                         >  4:66203/1‑148 (MQ=255)            cTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcg                                                                                                                                        <  3:34962‑M2/149‑12 (MQ=255)            cTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcg                                                                                                                                        <  3:113698‑M2/149‑12 (MQ=255)               gTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGTCCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgt                                                                                                                                       >  2:7943‑M2/1‑135 (MQ=255)               gTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgt                                                                                                                                       >  7:152893‑M2/1‑135 (MQ=255)               gTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACCCCCCCGCCCCCCGGGGAATTTCGAAGGCTGAACGCTGTGGCGTAACGGGgggagccggcgtgc                                                                                                                                     <  8:181166‑M2/149‑15 (MQ=255)                         aCCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCCCGCCCCCGCCCGCAGGGGAAATTAGAAGGCTGAAGCCTGTGGCGTACCAGTgggggcgggcgtgcccgcgaagac                                                                                                                           <  6:108718‑M2/149‑25 (MQ=255)                          ccGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCTGGGTAATTTCGATGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagg                                                                                                                          >  2:94562‑M2/1‑124 (MQ=255)                                  aCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGGAGGGGTATTTGGAAGGCTGCAGCCGGTGACTTACCTGTGGGAGCGGGGGTGCCCGCGCAGAGGGCGGcc                                                                                                                    >  3:258384/1‑147 (MQ=255)                                  aCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTAGCGGGCCCGCCCCCACCCGCAGGGGAATTTAGAAGGCTGAAGCCGGTGACTTTCCTGTGGGAGCGGGCGTGCCCGCGGAGAGGGCGGcc                                                                                                                    >  6:129372/1‑147 (MQ=255)                                            cgccCCGCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCCCCCGCAGGGTAATTTCGACGGCTGACGCCTGTGACTTACCTGTGGGAGCGGGCGGGCCCGCGAAGAGGGCGGCCCAGGCTTACAgg                                                                                                        <  5:108718/149‑1 (MQ=255)                                               cccTCACGGGGGGGTTTTTTTTTTTAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCTGGTAAATTTCGACGGCTTAAGCCTGTGACTTACCTGTGGGAGGGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGc                                                                                                     <  2:29697/149‑1 (MQ=37)                                                          ggcgTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACCCCCCCAACCCCAGGGTAAATTAGAAGGCTGAAACCTGTGAAATAACATTTGGAGCGGGCGTTCCCGCGAAAAGTGCGGCCCAGGCTTACAAGGGCTTATAGaaaa                                                                                           >  2:112748/1‑148 (MQ=255)                                                              tttttgtttttgACCGGTGGGGCCGTTTTCGCGGGCAGGCCCGCTCCGGCAGGTTATTTTCGATGGCTTATGCCTGTCACTTCCCTGTGGGAGCGGGCGTGCCGGCGAAGTGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTc                                                                                      <  6:301533/149‑1 (MQ=255)                                                                 ttgtttgAGACCGGTGTCGCCCTCTTCGCGGGCACCCCCCCACCCCCAGGGGAATTTAGAAGGCGGAAGCCGGTGACATACCAGTGGGGGCGGGCGTGCCCGCGAAGAGGGCGGCCCCCGCGTACACGGGCGTCTCGAAAAtagtagaa                                                                                   >  2:294270/1‑142 (MQ=255)                                                                       gagaCCGGTGTCGCCCTCTTCGCGGCCACGCCCGCTCCCGCAGGGTAATTTCGACGGCTCAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTgcg                                                                              <  5:129372/148‑1 (MQ=255)                                                                        agaCCGGTGTCCCCCTCTTCGCGGGCACGCCCGCTCCCGCTGGGTAATTTCGACGGCTGAAGCCTGTGACTTCCCTGTGGGAGGGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTgcgc                                                                             <  7:181166/148‑1 (MQ=255)                                                                          aCCGGTGGCGCCCTCTTCGCGGCCACGCCCGCTCCCGACGGTTAATTCCCAAGGCTCAACCCTGTCACTAACCTTTGGTAGGGGGCGTGCCCGCTAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTgg                                                                          <  1:110403/149‑1 (MQ=255)                                                                                  cgcgcgtttCGCGGGCACGCCCGCGCCCGCTGGTTAATTTCGATGGGTGACGCCTGTGACTTACCGTGGGGTGGGGGGGTGCCCGCGAATTGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTa                                                                  <  4:113698/142‑1 (MQ=255)                                                                                    cccTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGCAGAGGGCGGCCCCGGCGTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTa                                                                  >  7:109525/1‑147 (MQ=255)                                                                                          tCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGt                                                                   >  3:94955/1‑140 (MQ=255)                                                                                          tCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGt                                                                   <  4:94955/140‑1 (MQ=255)                                                                                            gcgGGCACCCCGGCTCCCGCAGGTTATTTTGGACGGCTGACGCCTGTGACTTCCCTGGGGGAGGGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGcc                                                        <  4:34962/149‑1 (MQ=255)                                                                                             cgGGCCCGCCCGCTCCCGCAGTTTAATTTCTACGGCTGACGCCTGTCACTACCGTGGGGGCGCGGGCGTGCCCGCTAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGccc                                                       <  3:66203/149‑1 (MQ=255)                                                                                                    gCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTAc                                                                                                           >  6:148868/1‑90 (MQ=255)                                                                                                    gCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGcgccgc                                                >  7:308667/1‑149 (MQ=255)                                                                                                    gCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGcgccgc                                                >  6:359761/1‑149 (MQ=255)                                                                                                    gCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCCTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGcgccgc                                                >  2:15915/1‑149 (MQ=255)                                                                                                        gCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgagg                                                                                     <  3:146741‑M2/108‑63 (MQ=255)                                                                                                        gCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgagg                                                                                     >  4:146741‑M2/1‑46 (MQ=255)                                                                                                            ccGCAGTGTAATTTCGAAGGATGGACCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgagaccggtctcaaagaaaaacgccgcccttgaggggcggcgtt                                                                            >  1:339512‑M2/1‑42 (MQ=255)                                                                                                            ccGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGcc                                        >  5:109742/1‑149 (MQ=255)                                                                                                             cGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaaaagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttgtactc                                         <  1:286004‑M2/147‑107 (MQ=255)                                                                                                                     aaTTTCGATGGCTGAAGCCTGTCACTTACCTGTGGGTGGGGGCGGGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACg                                <  4:258384/148‑1 (MQ=255)                                                                                                                      aTTTCGAAGGCTGAAGCCTGTGACTTACCTCTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGc                               >  8:217250/1‑148 (MQ=255)                                                                                                                           gAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCg                         >  7:142998/1‑149 (MQ=255)                                                                                                                             aGGCTGAAGCATTTTACTTACTTTTGGGTGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGgc                       <  1:112748/149‑1 (MQ=255)                                                                                                                               gCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGgcgc                     <  6:109742/149‑1 (MQ=255)                                                                                                                                cTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGgcgc                     >  7:202545/1‑148 (MQ=255)                                                                                                                                 tGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCtt                                                                                       <  2:52879/81‑1 (MQ=255)                                                                                                                                 tGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCtt                                                                                       >  1:52879/1‑81 (MQ=255)                                                                                                                                 tGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCa                    >  4:180123/1‑148 (MQ=255)                                                                                                                                   aaGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCaa                   <  5:359761/147‑1 (MQ=255)                                                                                                                                     gCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCt                                                                            <  6:11074/88‑1 (MQ=255)                                                                                                                                     gCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCt                                                                            >  5:11074/1‑88 (MQ=255)                                                                                                                                                   tgtgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCcgc                                                     >  3:57127/1‑97 (MQ=255)                                                                                                                                                   tgtgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCcgc                                                     <  4:57127/97‑1 (MQ=255)                                                                                                                                                    gtgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAc  >  4:268703/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTCGAGTACAACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAC  >  NC_002947/5914076‑5914369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.