Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,170,450 | C→A | 8.5% | R58S (CGC→AGC) | PP_3669 → | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,170,450 | 0 | C | A | 8.5% | 142.4 / 3.9 | 47 | R58S (CGC→AGC) | PP_3669 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (27/16); new base A (2/2); total (29/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.31e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01 |
ATGAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGCCTT > NC_002947/4170309‑4170596 | aTGAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGCACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCGGATCAGCAGCgg < 4:38834/149‑1 (MQ=255) ctgGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCa < 1:300299/148‑1 (MQ=255) tGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCGGATCAGCAGCgg < 1:70290/133‑1 (MQ=255) tGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCGGATCAGCAGCgg > 2:70290/1‑133 (MQ=255) tGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGAGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAaccc > 2:35061/1‑149 (MQ=255) cccTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACgg < 5:265798/149‑1 (MQ=255) gatgatCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCa > 1:151203/1‑149 (MQ=255) cAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTg < 2:151203/149‑1 (MQ=255) aaCCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGc > 7:152813/1‑149 (MQ=255) aCCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCt < 7:158333/149‑1 (MQ=255) tGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGaa > 1:308618/1‑149 (MQ=255) ccGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTgg > 3:65370/1‑149 (MQ=255) tGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCa > 3:105481/1‑149 (MQ=255) gAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTCATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCAt > 6:120241/1‑149 (MQ=255) aaaGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATgg < 2:180608/149‑1 (MQ=255) aaGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGCCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGa > 5:98305/1‑149 (MQ=255) aGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGAc > 1:203607/1‑149 (MQ=255) gCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACg > 6:181854/1‑149 (MQ=255) cTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCTGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGCGCCCGGCCATGGACGt > 7:164760/1‑149 (MQ=255) aTCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGAttt < 2:203607/148‑1 (MQ=255) aaTCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGcc < 4:105481/149‑1 (MQ=255) aaTCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGcc < 1:35061/149‑1 (MQ=255) tCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCAt > 8:215588/1‑149 (MQ=255) aCCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCTCGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCAt < 7:326138/125‑1 (MQ=255) aCCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCaa > 8:326138/1‑124 (MQ=255) aCCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAg > 3:35804/1‑149 (MQ=255) gTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCcg > 4:307951/1‑149 (MQ=255) gcgcCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGTCATGGACGTGATTTCCGCTGCCATCAGCCGCGcc > 4:275172/1‑149 (MQ=255) cgccgcCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGccc > 5:54781/1‑149 (MQ=255) ccgccCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCcgc < 4:65370/149‑1 (MQ=255) ccTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAg > 7:5314/1‑148 (MQ=255) ccTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAg < 8:5314/148‑1 (MQ=255) cgccTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGAccc < 3:307951/149‑1 (MQ=255) tGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACCTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGc > 5:94091/1‑148 (MQ=255) tGCGCGAGCTGTTAGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACACCACGGGCCATGCACATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCAGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGc > 6:304194/1‑148 (MQ=255) tGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTc < 2:176458/131‑1 (MQ=255) tGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTc > 1:176458/1‑131 (MQ=255) cgacgaCCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACg > 6:165956/1‑149 (MQ=255) ggccGCTGCGGATCAGCAGCTGCCGGGCCATGGAACCCACCCCACGGGCCATCCAGATCAATGCAGAACTGGGCCCGGCCAAGGACGTGATATCCGCTGCCATCAGCCGCGCCCGCGAGATCGACCCGGCCAACAGCTGCAACGTGtta > 2:137497/3‑148 (MQ=255) cggccgctgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCg > 7:284864/6‑149 (MQ=255) ccGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCg > 4:35263/1‑149 (MQ=255) cGCTGCTGATGCGCATCGGCCGGGCCATGGAACCCTTCGCACGGGCCATGCAGATCTTTGCTGAACTGTGCCCGGCCATTGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCGGGCCATCAGCTTCAACGTGTTCCGc < 8:164760/149‑1 (MQ=255) cGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGc < 5:181854/149‑1 (MQ=255) cGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGc > 8:324472/1‑149 (MQ=255) ctgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTggg < 7:215588/149‑1 (MQ=255) tgATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGc > 5:173105/1‑149 (MQ=255) tCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGCCtt > 2:22467/1‑149 (MQ=255) | ATGAACCTGCTGGTGCTGTTCGAAGCCCTGATGATCGAACGCAACCTGACCCGCGTGGGTGAAAAGCTGTTTATCACCCAATCCACCGTCAGCGCCGCCCTCGCCCGCCTGCGCGAGCTGTTCGACGACCCGCTGCTGATCCGCAGCGGCCGGGCCATGGAACCCACCCCACGGGCCATGCAGATCTTTGCTGAACTGGGCCCGGCCATGGACGTGATTTCCGCTGCCATCAGCCGCGCCCGCGAGTTCGACCCGGCCAACAGCTGCAACGTGTTCCGCCTGGGCCTT > NC_002947/4170309‑4170596 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |