| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,197,972 | C→T | 6.5% | intergenic (‑290/‑194) | PP_5620 ← / → PP_3689 | hypothetical protein/serine/threonine protein phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,197,972 | 0 | C | T | 6.5% | 179.1 / 2.3 | 61 | intergenic (‑290/‑194) | PP_5620/PP_3689 | hypothetical protein/serine/threonine protein phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (30/27); new base T (2/2); total (32/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01 | |||||||||||
CACAGCACAGTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGAAGGGAGAAT > NC_002947/4197827‑4198116 | cacagcacagTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGa < 4:293751/148‑1 (MQ=255) acagcacagTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGAcc < 8:112500/149‑1 (MQ=255) acagcacagTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGAc < 5:7387/148‑1 (MQ=255) acagcacagTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGAc > 7:112500/1‑148 (MQ=255) agTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGacg > 1:169101/1‑148 (MQ=255) ttCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATg > 6:202903/1‑149 (MQ=255) cATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATgg < 2:169101/148‑1 (MQ=255) aGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGcc > 2:362867/1‑148 (MQ=255) aCGTTACTCGATTCTATTTGGGATCGTCCAAGATATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCTGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCAtt < 7:328137/149‑1 (MQ=255) cGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCAttt > 8:193697/1‑149 (MQ=255) ttACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGATTTCCATATGAATCGGTCATCGACCATGACGAACGCTTGAATTCAGGGGCCCATTTTg > 8:122231/1‑149 (MQ=255) tCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGa > 2:304284/1‑149 (MQ=255) cGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTACCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTCGGGAt > 6:277869/1‑149 (MQ=255) aTTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTa < 6:164196/149‑1 (MQ=255) aTTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTa < 5:202903/149‑1 (MQ=255) gagGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGATTTCCCTATGAAGCGTTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAAc < 5:314459/148‑1 (MQ=255) ggATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGGTTTCCCTATGAAGCGTTCATCGACCATGACTCCCACATGAATGCATGTGCCAATTTTCGGGAAAAAGAACAGCCt > 1:299259/1‑149 (MQ=255) aTCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGa < 1:304284/149‑1 (MQ=255) tCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTc < 7:193697/149‑1 (MQ=255) agagATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTc < 1:362867/149‑1 (MQ=255) agagATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTc > 4:58157/1‑149 (MQ=255) tGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCg > 8:339975/1‑149 (MQ=255) cACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTg > 8:163564/1‑149 (MQ=255) cATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGc > 3:174949/1‑149 (MQ=255) gCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGAc < 6:239371/64‑1 (MQ=255) gCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGAc > 5:239371/1‑64 (MQ=255) tCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCt > 1:46423/1‑113 (MQ=255) tCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCt < 2:46423/113‑1 (MQ=255) cTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGAc < 3:58157/149‑1 (MQ=255) atttAGTCTAAGATCGAATTACCAAGGCGTGAATTCTTTCCCTATGAATCGGTCATCGAACATGACGCACGCTTGAATGAATGGGCCCATTTTTGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGTTGAc < 7:122231/148‑1 (MQ=255) tAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATTGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACt > 3:26965/1‑146 (MQ=255) tAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATTGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACt < 4:22047/146‑1 (MQ=255) tAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATTGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACt > 3:22047/1‑146 (MQ=255) tAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATTGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACt < 4:26965/146‑1 (MQ=255) tAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAg > 1:132490/1‑149 (MQ=255) tAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAg > 4:162198/1‑149 (MQ=255) aGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTa > 1:183236/1‑114 (MQ=255) aGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTa < 2:183236/114‑1 (MQ=255) aGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTTACAGACTGAgg > 4:54449/1‑148 (MQ=255) aGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGa < 8:179781/146‑1 (MQ=255) aGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAgg > 1:318268/1‑148 (MQ=255) tctaaTTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGATTGAATGCATGGGACCATTTTGGGGATTACGAAAAGGCTGAGTTCGCTCCTATGCTCCGTCTAGGCGAGCTGGTGACTAACTTATGTCa > 6:368913/4‑148 (MQ=255) gAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCaatt < 7:339975/149‑1 (MQ=255) aTTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCaattaa > 2:166586/1‑149 (MQ=255) aTTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCaattaa < 7:163564/149‑1 (MQ=255) ttACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCaattaat < 4:344757/149‑1 (MQ=255) tACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCaattaat < 8:183257/148‑1 (MQ=255) tACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCaattaat > 7:183257/1‑148 (MQ=255) cAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATg < 6:23173/105‑1 (MQ=255) cAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATg > 5:23173/1‑105 (MQ=255) aGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATCCATCGGCCCATTTTGGGGATTACCAACAGGCTCAGTTCGCGCCTATGCACCGTCTGGGCGAGCTGGTGACAGACTCAGGACAATTAATTActct > 5:298597/1‑149 (MQ=255) agTGAATGCTTTCCCTTTGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTAATAACAGGCTTAGTTCGCTCCTATGCTCAGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGa < 5:368913/148‑1 (MQ=255) gCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGACCTGGTGACAGACTGAGGGCAATTAATTCCTCTCGACTAgcgc > 5:73950/1‑149 (MQ=255) tCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGAt > 2:274469/1‑148 (MQ=255) tATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGc > 4:91496/1‑148 (MQ=255) aTGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCg > 3:358773/1‑148 (MQ=255) aTGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCg > 3:135431/1‑148 (MQ=255) tGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGaa < 1:274469/149‑1 (MQ=255) tGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGaa < 1:166586/149‑1 (MQ=255) aGCGGTCATCGTCCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGAAggg < 5:277869/149‑1 (MQ=255) tCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGAAGGGAGAAt < 2:132490/149‑1 (MQ=255) cGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGAAGGGAGAAt > 5:159416/1‑145 (MQ=255) | CACAGCACAGTGCGAGAAAGCCCTTCATAGGACGTTACTCGATTCTAGAGGGGATCGTCCAAGAGATTCACTGAGCACGGGGCATGCTCCTTTAGTCTAAGATCGAATTACAAAGGCGTGAATGCTTTCCCTATGAAGCGGTCATCGACCATGACGCACGCTTGAATGCATGGGCCCATTTTGGGGATTACGAACAGGCTGAGTTCGCTCCTATGCTCCGTCTGGGCGAGCTGGTGACAGACTGAGGTCAATTAATTCCTCTCGACTAGCGCGATAAGCGAAGGGAGAAT > NC_002947/4197827‑4198116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |