Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,299,634 | G→A | 8.3% | A89T (GCA→ACA) | PP_3772 → | repressor protein‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,299,634 | 0 | G | A | 8.3% | 136.4 / 2.7 | 48 | A89T (GCA→ACA) | PP_3772 | repressor protein‑like protein |
Reads supporting (aligned to +/- strand): ref base G (22/22); new base A (2/2); total (24/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 |
CTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAGCGGCGCAAGAGCCTGCAGATGCCACGCTGCT > NC_002947/4299492‑4299782 | cTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAg < 7:198039/149‑1 (MQ=255) ggggATGGCGCCTGCACACCTTAGCCAGATTCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGc < 8:326644/147‑1 (MQ=255) cgcCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAg < 6:245715/149‑1 (MQ=255) gcCTGCACACCTTAGCCAGATCCTTTCAGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGc > 1:9660/1‑149 (MQ=255) cacaCCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAg < 7:110052/147‑1 (MQ=255) cacCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGa < 2:92947/149‑1 (MQ=255) acCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGa > 2:333520/1‑148 (MQ=255) acCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGa > 4:289170/1‑148 (MQ=255) acCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGa > 7:159358/1‑148 (MQ=255) acCTTAGCCAGATCCTTTCCGACAAGAACGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACACACAAGCGGCTGTCGAGCCAGGTGa > 3:161789/1‑148 (MQ=255) cTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaa < 6:124052/149‑1 (MQ=255) cTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaa > 6:306963/1‑149 (MQ=255) cTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaa < 8:159358/149‑1 (MQ=255) ttAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaa > 4:251529/1‑148 (MQ=255) aGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaac < 3:289170/147‑1 (MQ=255) aGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGctc > 5:155772/1‑149 (MQ=255) aTCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGa < 6:95349/137‑1 (MQ=255) aTCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGa > 5:95349/1‑137 (MQ=255) aTCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGctctc < 2:238330/149‑1 (MQ=255) cTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTg < 6:155772/148‑1 (MQ=255) cAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGAcc > 6:45208/1‑149 (MQ=255) aaGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCt < 3:251529/149‑1 (MQ=255) gACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTgg < 8:37110/149‑1 (MQ=255) tGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACACACAAGCGGCTGTCGAGcc > 7:342681/1‑112 (MQ=255) tGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACACACAAGCGGCTGTCGAGcc < 8:342681/112‑1 (MQ=255) tGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCAGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTg > 4:116492/1‑149 (MQ=255) cccGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCaaa < 3:116492/149‑1 (MQ=255) cgcATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCTGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGGCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTAt < 5:80523/149‑1 (MQ=255) aTCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTAtctc > 6:249359/1‑149 (MQ=255) cGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCAGAAGCGGCAAAGGTATCTcc > 5:218198/1‑148 (MQ=255) gggCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCg < 6:218198/146‑1 (MQ=255) cATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGaaa < 5:306963/149‑1 (MQ=255) aTCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGAc > 5:335709/1‑99 (MQ=255) aTCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGAc < 6:335709/99‑1 (MQ=255) gAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCg > 6:105041/1‑149 (MQ=255) aaGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCgg > 2:62132/1‑149 (MQ=255) aaGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCgg > 3:284140/1‑149 (MQ=255) ttGCCACGGGGCTGGTTCGACGCGCTGTCGGCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCgaa < 8:236147/135‑1 (MQ=255) ttGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCgaa > 7:236147/1‑135 (MQ=255) ttGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAg > 8:245180/1‑149 (MQ=255) ccACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGgct > 6:68476/1‑149 (MQ=255) ccACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGgc < 5:105041/148‑1 (MQ=255) aCGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGgctgc < 1:333520/149‑1 (MQ=255) gCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCa > 4:235607/1‑149 (MQ=255) gTTCGACGCGCTGTCGCGAGGCGAACACACACAAGCGGCTGTCGAGCCAGGTGACATCAAGCTCTCTGCAGCCGACCTTGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGTCAAAGGCTGCTGGCAgcg < 4:161789/148‑1 (MQ=255) ttCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAgcggc < 7:245180/149‑1 (MQ=255) gACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAGCGgcgc > 2:237518/1‑148 (MQ=255) ccAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAGCGGCGCAAGAGCCTg > 6:86460/1‑145 (MQ=255) gCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGGGGGGGGGGGTCCGAAGGAACCCCGCAAAGGATGCTGGCAGCGGCGCAAGAGCCTGCAGATGCCACgctcct > 1:116816/1‑149 (MQ=255) gCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAGCGGCGCaa < 2:321544/126‑1 (MQ=255) gCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAGCGGCGCaa > 1:321544/1‑126 (MQ=255) | CTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTGCTGGCAGCGGCGCAAGAGCCTGCAGATGCCACGCTGCT > NC_002947/4299492‑4299782 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |