| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,340,075 | A→T | 17.8% | intergenic (+60/‑271) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,340,075 | 0 | A | T | 17.8% | 46.6 / 3.6 | 32 | intergenic (+60/‑271) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (12/13); new base T (3/3); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.26e-01 | |||||||||||
GGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGA > NC_002947/4339929‑4340218 | gggCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa < 4:236786/147‑1 (MQ=255) gccgcTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa > 8:55889/1‑142 (MQ=255) gccgcTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa < 7:55889/142‑1 (MQ=255) tGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTggtgtcac > 3:86417/1‑142 (MQ=255) ggCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgc < 8:63414/149‑1 (MQ=255) cTATGAGCTGGAGGTGGTGCAGACCATCCCGTCCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTTACCGCGCAAGAGAGGGTGGCGCCACCCCCGCAATAGCGCGGTTAA‑cc > 3:257882/1‑149 (MQ=255) tATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTTACCCCGCAATCGCAGGGGTCACCACCGCCCCCATAGCG‑GGTGAA‑cccc > 5:203654/1‑148 (MQ=255) tGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCg‑g > 4:303111/1‑138 (MQ=255) tGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCg‑g < 3:303111/138‑1 (MQ=255) gCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTAACCGCGCATGCGAGGGTGACACCACCGCCGCATTCGCC‑GGTAAA‑CCCGCAcc > 8:266918/1‑148 (MQ=39) cTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCt > 2:48802/1‑148 (MQ=255) cAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgcg > 3:209543/1‑121 (MQ=255) cAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgcg < 4:209543/121‑1 (MQ=255) cGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTTAACCCGAATTGGAGGGTGAACCCAACGCCCCAATAGCG‑CGTAAA‑CAGCCTCCAAAAGGGCCCgtggtgggttttg > 5:322386/1‑141 (MQ=255) gACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTAACCGCGAATGCGAGGGTGACACCACCCCCCCATTCACG‑GGGAAA‑CCCGCACCGACACGGCCCTTGGTGCATTTTACAAGGc > 4:272966/1‑149 (MQ=37) atggCTGAGAACACACAAGCAATTGATTTCGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GTTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCg < 1:90779/149‑1 (MQ=255) atggCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTAACCCCGAAAGCCACGGTGACAACACCCACCCAATAGCG‑GGTAAA‑ACCCCAACAACAAGGCCCATGGTGCTTTTTACAGGGGGGAGTTATGGCCg > 2:90779/1‑149 (MQ=255) caaCACACATGAAATTTTTTTCGGGGGGCGGTGTCGTCGGGGTTTTACCCGCTAAGGGGTGGGTTACACCACGTACGTTTTCGCG‑GTTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGccc < 6:322386/147‑1 (MQ=255) acacacAAGCAATTGATTTAGCGGGGCCCTGTAGGCGGGGGTTCACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCAt < 1:167960/149‑1 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTAGCG‑GGTTAA‑CCCGCTCCTACAGGGGCCTTGGTGCGTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCCTACct > 5:356476/1‑149 (MQ=38) aTTTCGCGGGGCCCTGTCGGAGCGGGTTTACCCGCTAATGCGAGGGTGACACCACCGCCGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGc < 5:132622/122‑1 (MQ=255) gCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAAGGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 1:48802/148‑1 (MQ=255) gCGGGGCCCTGTAGCAGCGGGATTACCCGCGAATGCGAGGGGGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 7:266918/148‑1 (MQ=255) ggggcCCCTGTAGGCGCGGGTTACCCCGCTACGGCGAGGGGCACCCCCCCCCCCCTTGCG‑G‑GGTAAACCCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGa < 3:128196/148‑1 (MQ=255) gAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGGTTTTGCCAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCGTGCCAAAATCTTGGAATACCATAatat > 5:208254/1‑148 (MQ=255) cgtgTTAACCCGCGAATGCCTGGGTGACACCACCTACCAATAGGGT‑TTTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGata < 5:313151/146‑1 (MQ=255) gTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAgg > 1:146772/1‑63 (MQ=255) gTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAgg < 2:146772/63‑1 (MQ=255) ccGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 2:284952/1‑149 (MQ=25) gcgAATGCGTCGGTGGTGTCACCCTCGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAcc > 6:234048/1‑149 (MQ=25) ctaaggCGAGGGTCACACCCCCGACGCATGCGCG‑GTTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCt < 6:208254/144‑1 (MQ=255) ttGCGTGGGTGACACCACCGACGAATTGGGG‑GTTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGa < 3:351758/148‑1 (MQ=255) aTGGGAGGGTGACACCACCGACGAATTCGCG‑GTTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGa < 3:272966/149‑1 (MQ=255) gAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGatat < 4:289219/131‑1 (MQ=255) gAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGatat > 3:289219/1‑131 (MQ=255) | GGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCG‑GGTAAA‑CCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGA > NC_002947/4339929‑4340218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |