Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,479,116 | T→G | 7.4% | V156G (GTC→GGC) | ybdR → | Zn‑dependent oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,479,116 | 0 | T | G | 7.4% | 154.1 / 4.4 | 54 | V156G (GTC→GGC) | ybdR | Zn‑dependent oxidoreductase |
Reads supporting (aligned to +/- strand): ref base T (22/28); new base G (2/2); total (24/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01 |
TACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCG > NC_002947/4478973‑4479259 | tACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcga < 2:88879/149‑1 (MQ=255) tACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcga < 7:335176/149‑1 (MQ=255) ccGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcgacg < 6:232607/149‑1 (MQ=255) ggATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTcgc > 4:290124/1‑149 (MQ=255) gatcgatcATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTcgcg < 8:212835/149‑1 (MQ=255) gatcgatcATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTGCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTcgcg < 8:157524/149‑1 (MQ=255) atcatcAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGa > 2:146330/1‑149 (MQ=255) atcatcAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGACTTTGAATGGCCcgacatt < 6:168313/137‑4 (MQ=255) atcatcAACAAAAAGGGCATACCACCAGGCGCAGCGCTGATCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGACTTTGAATGGCCcgacatt > 5:168313/1‑134 (MQ=255) catcaACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGAGCCATTCAAAGTCCCGACGACCCTCGCGGATGAc > 7:167686/1‑148 (MQ=255) atcaACAAAAAGGGCATACCACCAGGCGCATCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGACTTTGAATGGCCcgac < 4:109492/131‑1 (MQ=255) atcaACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGACTTTGAATGGCCcgac > 3:109492/1‑131 (MQ=255) aacaaAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACCGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAgg < 6:40104/149‑2 (MQ=255) aacaaAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAg < 8:317440/148‑1 (MQ=255) caaAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGc < 2:42994/149‑1 (MQ=255) aaaGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGt < 6:268951/149‑1 (MQ=255) aaaGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGt < 5:23117/149‑1 (MQ=255) cATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTAt > 3:151344/1‑149 (MQ=255) accaccAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATcc > 4:197953/1‑148 (MQ=255) ccaccaGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCg < 1:146330/148‑1 (MQ=255) cgcTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcgacg > 5:187546/1‑101 (MQ=255) cgcTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCcgacg < 6:187546/101‑1 (MQ=255) cTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGc < 4:151344/149‑1 (MQ=255) ttCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTg < 3:307758/149‑1 (MQ=255) cATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGtcat < 3:197953/149‑1 (MQ=255) tATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATg < 3:290124/148‑1 (MQ=255) tGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGCCAAGCGGtgg > 6:307900/1‑138 (MQ=255) tCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGc > 5:207219/1‑149 (MQ=255) tCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGc < 6:207219/149‑1 (MQ=255) tCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGc > 6:51709/1‑149 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGc < 3:139551/124‑1 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGc > 4:139551/1‑124 (MQ=255) tGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAg > 7:6570/1‑149 (MQ=255) cAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATc > 1:141148/1‑149 (MQ=255) aaGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGCTTGGCGAAGGCTCATCg > 5:110566/1‑149 (MQ=255) aaGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCg > 5:222291/1‑149 (MQ=255) aTTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGc > 6:157275/1‑148 (MQ=255) ttAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTAt < 8:6570/149‑1 (MQ=255) gggTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATgg < 3:170083/148‑1 (MQ=255) cccAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCggg < 5:157275/149‑1 (MQ=255) ccAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCTGATGACAAAGTGCTGTTACTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATTACGAGATTGGCGAAGGCTCATAGGTAGCGAACTATgtctcgtg > 6:52252/1‑141 (MQ=255) ccAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCgggg < 5:52252/149‑1 (MQ=255) cAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTa < 7:327345/130‑1 (MQ=255) cAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTa > 8:327345/1‑130 (MQ=255) aaaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGt < 2:185015/95‑1 (MQ=255) aaaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGt > 1:185015/1‑95 (MQ=255) aaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGc > 7:160412/1‑147 (MQ=255) aGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAg < 6:222291/149‑1 (MQ=255) aGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAg > 6:123317/1‑149 (MQ=255) aaTGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCgg < 6:238905/139‑1 (MQ=255) aaTGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCgg > 5:238905/1‑139 (MQ=255) gCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGtt > 4:72534/1‑147 (MQ=255) cATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGt < 8:160412/149‑1 (MQ=255) aaaGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTgccg < 3:72534/148‑1 (MQ=255) | TACCGGGCGCGGATCGATCATCAACAAAAAGGGCATACCACCAGGCGCAGCGCTGTTCGGATACAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCG > NC_002947/4478973‑4479259 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |