Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,479,177 | G→C | 9.1% | W176C (TGG→TGC) | ybdR → | Zn‑dependent oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,479,177 | 0 | G | C | 9.1% | 154.6 / 5.0 | 53 | W176C (TGG→TGC) | ybdR | Zn‑dependent oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (29/18); new base C (3/2); total (32/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 |
CATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGATGACAACGACTACCGG > NC_002947/4479040‑4479318 | cATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGtcat < 3:197953/149‑1 (MQ=255) tATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATg < 3:290124/148‑1 (MQ=255) tGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGCCAAGCGGtgg > 6:307900/1‑138 (MQ=255) tCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGc > 5:207219/1‑149 (MQ=255) tCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGc < 6:207219/149‑1 (MQ=255) tCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGc > 6:51709/1‑149 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGc > 4:139551/1‑124 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGc < 3:139551/124‑1 (MQ=255) tGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAg > 7:6570/1‑149 (MQ=255) cAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATc > 1:141148/1‑149 (MQ=255) aaGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGCTTGGCGAAGGCTCATCg > 5:110566/1‑149 (MQ=255) aaGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCg > 5:222291/1‑149 (MQ=255) aTTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGc > 6:157275/1‑148 (MQ=255) ttAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTAt < 8:6570/149‑1 (MQ=255) gggTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATgg < 3:170083/148‑1 (MQ=255) cccAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCggg < 5:157275/149‑1 (MQ=255) ccAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCTGATGACAAAGTGCTGTTACTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATTACGAGATTGGCGAAGGCTCATAGGTAGCGAACTATgtctcgtg > 6:52252/1‑141 (MQ=255) ccAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCgggg < 5:52252/149‑1 (MQ=255) cAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTa < 7:327345/130‑1 (MQ=255) cAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTa > 8:327345/1‑130 (MQ=255) aaaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGt > 1:185015/1‑95 (MQ=255) aaaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGt < 2:185015/95‑1 (MQ=255) aaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGc > 7:160412/1‑147 (MQ=255) aGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAg > 6:123317/1‑149 (MQ=255) aGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAg < 6:222291/149‑1 (MQ=255) aaTGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCgg < 6:238905/139‑1 (MQ=255) aaTGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCgg > 5:238905/1‑139 (MQ=255) gCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGtt > 4:72534/1‑147 (MQ=255) cATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGt < 8:160412/149‑1 (MQ=255) aaaGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTgccg < 3:72534/148‑1 (MQ=255) ccTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGc > 5:291234/1‑149 (MQ=255) cgGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGgc < 5:123317/149‑1 (MQ=255) gATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGgcgc < 6:291234/149‑1 (MQ=255) cAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGgctc > 2:158817/1‑142 (MQ=255) cAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGcaca > 2:235302/1‑149 (MQ=255) cAAAGTGATGTTCCTTTGCGACTTCCTTCGCTCCGCTTGTCTAGCGGTCATCAATGCGGAGTTTGGCGAAGGCTCATCGGTAGGGATCTATGTCGCGGGGCCAGTGGTTCTGTTGAGTGCCGCCTGCGCAGGGATGCTGGgcgc < 1:158817/144‑1 (MQ=255) gTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCa > 7:167312/1‑149 (MQ=255) ccTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCAtgg > 2:318885/1‑149 (MQ=255) cTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCAtggt < 8:167686/149‑1 (MQ=255) cTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCAtggt > 6:75344/1‑149 (MQ=255) cTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCAtgg < 6:314647/148‑1 (MQ=255) cTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCAtgg > 5:314647/1‑148 (MQ=255) aTCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCAtggtg > 6:261247/1‑148 (MQ=255) cGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGAGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGAt > 4:112191/1‑148 (MQ=255) gACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGATGa > 4:250965/1‑149 (MQ=255) cTTCCCACCGCGTGGCCAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCGAGTGGGGCTGTTGAGTGCCGCCTGCGCTCGGATGCTGGGCGCGGACAGCGTCGTCAGGGTGGATGACacc > 2:281055/1‑145 (MQ=255) ttCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGATGACAACGAc > 4:145468/1‑149 (MQ=255) cccACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGATGACAACGACTa > 2:312188/1‑149 (MQ=255) atgaCCGCTTGCCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATg < 6:372144/61‑1 (MQ=255) atgaCCGCTTGCCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATg > 5:372144/4‑64 (MQ=255) atgaCCGCTTGCCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGcac > 6:139289/4‑120 (MQ=255) atgaCCGCTTGCCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGcac < 5:139289/117‑1 (MQ=255) ccGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGATGACAACGACTACCgg > 3:231044/1‑149 (MQ=255) | CATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTCTTCATGGTGGATGACAACGACTACCGG > NC_002947/4479040‑4479318 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |