Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,759,457 | T→G | 10.0% | P109P (CCA→CCC) | pvdP ← | pyoverdine biosynthesis‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,759,457 | 0 | T | G | 10.0% | 139.2 / 7.2 | 50 | P109P (CCA→CCC) | pvdP | pyoverdine biosynthesis‑like protein |
Reads supporting (aligned to +/- strand): ref base T (23/22); new base G (3/2); total (26/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 |
GCCCCGCATTGCCAAATACCCCCCACACTTCATCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGCCCCCTTGAACGACCAGCGC > NC_002947/4759309‑4759601 | gccCCGCATTGCCAAATACCCCCCACACTTCATCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGt < 1:152150/149‑1 (MQ=255) gccCCGCATTGCCAAATACCCCCCACACTTCATCCAGCACGAGATGGCACTCGTAGCGCGACATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGt < 1:49383/149‑1 (MQ=255) ccccGCATTGCCAAATACCCCCCACACTTAATCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTg > 3:34560/1‑149 (MQ=255) cccACACTTCATCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTg‑g > 6:211187/1‑130 (MQ=255) cccACACTTCATCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTg‑g < 5:211187/130‑1 (MQ=255) attcAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTcggcg < 4:34560/145‑1 (MQ=255) aTCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTcggcgg > 5:204355/1‑149 (MQ=255) ccAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTa > 5:162707/1‑149 (MQ=255) cACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTGGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATc > 2:214475/1‑147 (MQ=255) aCGAGATGGCACTCGTAGCGCGGCATGTGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTcggcg < 1:100519/141‑1 (MQ=255) aCGAGATGGCACTCGTAGCGCGGCATGTGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTcggcg > 2:100519/1‑141 (MQ=255) aCGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAg < 6:21384/149‑1 (MQ=255) aCGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAg < 6:204355/149‑1 (MQ=255) gagaTGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAgg > 3:184475/1‑148 (MQ=255) gaTGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTaa > 6:103510/1‑149 (MQ=255) gggaCTCGTAGCGCGGCATTCGGGCGCCATGTGGACTGTCGAACATGCGCCAGCGTTACCGTCCGGGCTTGT‑CGGCAGGCAAGTCGCCGAGCAGCCGTTATCGTG‑GCTCTGCACGGCTGCGCAAGCGGTCTGCGGTATCGAGTTatgc < 8:84132/145‑4 (MQ=255) gTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAAt < 4:184475/147‑1 (MQ=255) gcgcGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAAtgctgc > 4:325082/1‑149 (MQ=255) cgcgGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCg > 1:232683/1‑149 (MQ=255) gcgGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCgg < 6:162707/149‑1 (MQ=255) gCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGccc > 1:181602/1‑149 (MQ=255) ccgccATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTgcgc < 3:325082/149‑1 (MQ=255) ccATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGC‑CACGATATCGGGTGCTCgg > 1:218185/1‑85 (MQ=37) ccATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGC‑CACGATATCGGGTGCTCgg < 2:218185/85‑1 (MQ=37) gCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGAt < 6:333665/149‑1 (MQ=255) gCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGAt < 5:103510/149‑1 (MQ=255) gTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGTCCGGCAGGCAAGTCGCCGAGCACCCGATATCGTg < 1:43028/69‑1 (MQ=255) tCGAACAAGCGCCAGCGTAACCATCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACaa > 1:244180/1‑149 (MQ=255) gAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAAtt > 3:112295/1‑149 (MQ=255) cAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTc > 2:235998/1‑147 (MQ=255) gcgcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCACAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCACAACATCGATGAACAATTCCAGCg > 7:127555/1‑149 (MQ=255) cgcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGt < 8:247526/149‑1 (MQ=255) gcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCa < 8:225857/125‑1 (MQ=255) gcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCa > 7:225857/1‑125 (MQ=255) gcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGAt < 4:268456/133‑1 (MQ=255) gcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGAt > 3:268456/1‑133 (MQ=255) gcCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGtc < 4:112295/149‑1 (MQ=255) cAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGtctc > 6:225196/1‑149 (MQ=255) gTACCCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATCTCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGccc < 8:76740/149‑1 (MQ=255) aCCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGc < 4:75888/149‑1 (MQ=255) cGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGcc < 1:121552/143‑1 (MQ=255) cGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGcc > 2:121552/1‑143 (MQ=255) cGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCaa < 2:232683/149‑1 (MQ=255) ttGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGc > 8:60541/1‑147 (MQ=255) t‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGccc > 7:295613/1‑141 (MQ=255) t‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGccc < 8:295613/141‑1 (MQ=255) gtgCCGAGC‑CACGATATCGGGTGCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGcccc > 5:225193/3‑149 (MQ=255) tgCCGAGC‑CACGATATCGGGTGCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGccccc > 5:138571/2‑149 (MQ=255) gCCGAGCACCCGATATCGTG‑GCTCGGCACAGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGccccat > 7:54573/1‑147 (MQ=255) ccGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCTCCCTGCAAGCCCGGCAAGCCGGCCTGCGCCCCCtt < 1:235998/149‑1 (MQ=255) cacGATATCGGGTGCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGCCCCCTTGAACGa < 6:138571/147‑1 (MQ=255) gTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGCCCCCTTGAACGACCAgcgc > 2:10483/1‑146 (MQ=255) | GCCCCGCATTGCCAAATACCCCCCACACTTCATCCAGCACGAGATGGCACTCGTAGCGCGGCATGCGGCCGCCATCGGCACTGTCGAACAAGCGCCAGCGTAACCGTCCCGGCTTGT‑CGGCAGGCAAGTCGCCGAGCACCCGATATCGTG‑GCTCGGCACCGCTGCGCAAGCGCTCGGCGGTATCGAGGTAACCGCGAATGCTGCGGCCCTTCTGCGCAACATCGATGAACAATTCCAGCGTCTCGCCCTGCAAGCCCGGCAAGCCGGCCTGCGCCCCCTTGAACGACCAGCGC > NC_002947/4759309‑4759601 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |