Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,807,254 | G→A | 8.0% | S213F (TCC→TTC) | PP_4234 ← | bifunctional aldehyde oxidase/xanthine dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,807,254 | 0 | G | A | 8.0% | 143.3 / 2.6 | 50 | S213F (TCC→TTC) | PP_4234 | bifunctional aldehyde oxidase/xanthine dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (23/23); new base A (2/2); total (25/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01 |
TCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAAGC > NC_002947/4807107‑4807401 | tCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGga < 1:181526/149‑1 (MQ=255) cTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGgag < 4:181447/148‑1 (MQ=255) cTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGgag < 3:261507/148‑1 (MQ=255) cgggcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAAc > 4:112117/1‑149 (MQ=255) gcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCa > 6:361750/1‑149 (MQ=255) ggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCAtcg < 4:24220/149‑1 (MQ=255) cGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTg < 3:112117/149‑1 (MQ=255) ggCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGt < 8:282082/147‑1 (MQ=255) gcgcTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGccac > 2:88518/1‑149 (MQ=255) gcTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGccaccc < 4:246263/149‑1 (MQ=255) tGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCcacccacc > 1:93587/1‑149 (MQ=255) ggCGTAGAACAACCCCTGCTCGGTTAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGga < 1:154120/111‑1 (MQ=255) ggCGTAGAACAACCCCTGCTCGGTAAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGga > 2:154120/1‑111 (MQ=255) gCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGccacccac < 1:200046/146‑1 (MQ=255) gCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGccacccac > 2:200046/1‑146 (MQ=255) gAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACg > 1:158949/1‑148 (MQ=255) aacaacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGaa < 2:158949/149‑1 (MQ=255) caacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGc > 7:19732/1‑149 (MQ=255) ccccTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCgg > 4:255525/1‑148 (MQ=255) ccTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAg < 1:88518/149‑1 (MQ=255) ggTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGcc < 6:323536/147‑1 (MQ=255) aGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAgg > 4:25022/1‑149 (MQ=255) gTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑t > 4:290778/1‑149 (MQ=255) tCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑Tc < 6:209217/149‑1 (MQ=255) cTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTgg > 7:200890/1‑148 (MQ=255) gTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTAc > 2:185366/1‑148 (MQ=255) gTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTAc < 1:185366/148‑1 (MQ=255) ttGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAg < 8:19732/149‑1 (MQ=255) ttGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAg < 2:93587/149‑1 (MQ=255) ggCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAgcgg > 1:341235/1‑149 (MQ=255) gctgctTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGC‑TCGCGCTGGTACAgcggc > 4:132381/1‑149 (MQ=255) gACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGc < 8:200890/149‑1 (MQ=255) cacaCCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCAcc < 5:361750/149‑1 (MQ=255) acCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGCTCGCGCTGGTACAGCGGCGCCTGGGCACCGt < 1:221574/149‑1 (MQ=255) acCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCg < 7:314499/147‑1 (MQ=255) acCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCg > 8:314499/1‑147 (MQ=255) acCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGt > 8:254561/1‑148 (MQ=255) acCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGt > 2:94897/1‑148 (MQ=255) ggCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACg < 3:255525/149‑1 (MQ=255) ttGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGAt < 3:25022/149‑1 (MQ=255) gtggGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAg < 5:9890/94‑1 (MQ=255) gtggGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAg > 6:9890/1‑94 (MQ=255) aGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCtt < 7:254561/149‑1 (MQ=255) cgatgAGTTCTCCAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCAc > 7:316580/5‑113 (MQ=255) cgatgAGTTCTCCAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCAc < 8:316580/109‑1 (MQ=255) cgatgAGTTCTCCAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTgc > 2:181642/5‑149 (MQ=255) cATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTgc > 7:232458/1‑149 (MQ=255) cATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTgc > 4:149735/1‑149 (MQ=255) ggAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTg > 1:50099/1‑138 (MQ=255) ggAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTg < 2:50099/138‑1 (MQ=255) aGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTg < 1:94897/149‑1 (MQ=255) ttcttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACt > 4:138813/1‑133 (MQ=255) ttcttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACt < 3:138813/133‑1 (MQ=255) cTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGaa < 1:181642/149‑1 (MQ=255) tGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAAg > 7:231244/1‑149 (MQ=255) ggAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAAgc > 3:298433/1‑149 (MQ=255) ggAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAAgc < 3:290778/149‑1 (MQ=255) | TCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGG‑TCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAAGC > NC_002947/4807107‑4807401 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |