Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,827,095 | T→C | 54.3% | V1365V (GTA→GTG) | pvdL ← | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,827,095 | 0 | T | C | 54.3% | 15.4 / 70.9 | 59 | V1365V (GTA→GTG) | pvdL | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base T (15/12); new base C (17/15); total (32/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCATTCCCACACCGAGACGTCGAAACTGAT > NC_002947/4826949‑4827241 | cGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTa > 5:38988/1‑148 (MQ=255) tgCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTg < 3:220731/149‑1 (MQ=255) cAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTg > 6:104884/1‑147 (MQ=255) aGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAg > 5:83685/1‑149 (MQ=255) gTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGc > 5:105993/1‑149 (MQ=255) ttGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGGAACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGc < 1:53000/149‑1 (MQ=255) cACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTa < 5:104884/148‑1 (MQ=255) cACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTa < 7:133738/148‑1 (MQ=255) aCCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAg < 4:122051/143‑1 (MQ=255) aCCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAg > 3:122051/1‑143 (MQ=255) aCCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGt > 2:108441/1‑149 (MQ=255) gcaCCTGCAGCACGCGGTCACGCAGCGTGTGCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCAt > 1:27598/1‑148 (MQ=255) aCCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGc < 6:38988/149‑1 (MQ=255) gCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGACCACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATa < 1:108441/149‑1 (MQ=255) aGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACg > 8:258795/1‑149 (MQ=255) tG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGc < 2:204350/149‑1 (MQ=255) gCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCg < 2:34937/148‑1 (MQ=255) ggACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAgg < 6:32194/130‑1 (MQ=255) ggACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAgg > 5:32194/1‑130 (MQ=255) ggACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGTATCGCTGccctg > 3:183624/1‑145 (MQ=255) aCAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTGCCCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTcg > 4:349890/1‑149 (MQ=255) cAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTcgc > 6:260375/1‑149 (MQ=255) cGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGAt > 1:229482/1‑149 (MQ=255) cGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGAt > 1:234653/1‑149 (MQ=255) gCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATg > 6:91458/1‑149 (MQ=255) cccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAgg < 5:260375/149‑1 (MQ=255) cccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATaa < 6:254648/102‑1 (MQ=255) cccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATaa > 5:254648/1‑102 (MQ=255) ccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAggg < 6:105993/149‑1 (MQ=255) ccGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAggg > 3:211136/1‑149 (MQ=255) cGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAGAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGc > 3:305227/1‑149 (MQ=255) aaCACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGc < 2:27598/149‑1 (MQ=255) acCCAGCGCAAGCTACTGCATGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAg < 6:340069/149‑1 (MQ=255) acCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAg > 2:32478/1‑149 (MQ=255) ccAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCa > 1:71223/1‑149 (MQ=255) cgcAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTc < 4:261068/128‑1 (MQ=255) cgcAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACATGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTc > 3:261068/1‑128 (MQ=255) cTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTg > 5:74154/1‑147 (MQ=255) gCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGAt < 6:53233/113‑1 (MQ=255) gCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGAt > 5:53233/1‑113 (MQ=255) cAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCg < 2:71223/147‑1 (MQ=255) ggCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGa < 4:211136/149‑1 (MQ=255) cACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCAACAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGAc > 6:349163/1‑148 (MQ=255) gCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCg < 7:258795/148‑1 (MQ=255) tCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCa > 4:68950/1‑149 (MQ=255) tGG‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCATTc > 1:90315/1‑149 (MQ=255) gg‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGaa < 7:196152/142‑1 (MQ=255) gg‑ACGAACACCTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGaa > 8:196152/1‑142 (MQ=255) gAACACCTGCAACAGCGGCTGCACAAAGTTCAGCGTAGTCACAACATAAGAATGCAACAGGGCAGCGATACGCTGCGGGTCGCGATGTTCTAAAGGGCAGGCGAGCACCAGCTTGCAGACGGTGACAAg > 3:67228/1‑129 (MQ=255) gAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCATTCCcaca > 2:243181/1‑149 (MQ=255) caaCACCTGCAACAGCGGAGGCACAAAGTGAAGCGTAGTCACCCCATAAGCCTTCACGAGTGCAGCTATACGCTGCGTGTCGCGATGTTCACCAGTGCCTGCTAGAACCATCTTTCAGCCTTTGACCAg < 4:67228/128‑1 (MQ=255) acacCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCg > 4:248847/1‑119 (MQ=255) acacCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCg < 3:248847/119‑1 (MQ=255) cTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACTCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGa < 4:293117/98‑1 (MQ=255) cTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAg < 4:162469/112‑1 (MQ=255) cTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAg > 3:162469/1‑112 (MQ=255) cTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCATTCCCACACCgaga > 7:89214/1‑149 (MQ=255) cTGCAACAGCGGCGGCACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGTCCAGCGGCCAGAAGCATTCCCACACCgaga < 1:32478/149‑1 (MQ=255) ggTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCATTCCCACACCGAGACGTCGAAACTGAt < 6:74154/149‑1 (MQ=255) | CGGTTGTGCAGTTGCACCTGCGGCAGCACCTGCAGCACGCGGTCACGCAGCGTG‑GCGGACAACGCTTCGCCACCCGAGAACACCCAGCGCAAGCTACTGCAGGCACTTGCCTGCGGCTCCTGG‑ACGAACACCTGCAACAGCGGCGGTACAAAGTGCAGCGTAGTCACCCCATAAGCCTGCACCAGGGCAGCGATACGCTGCGGGTCGCGATGTTCACCAGGGCCGGCGAGCACCAGCTTGCAGCCGGTGACCAGCGGCCAGAAGCATTCCCACACCGAGACGTCGAAACTGAT > NC_002947/4826949‑4827241 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |