Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,855,539 | T→G | 8.6% | I106M (ATT→ATG) | PP_4270 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,855,539 | 0 | T | G | 8.6% | 171.7 / 7.8 | 58 | I106M (ATT→ATG) | PP_4270 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (29/24); new base G (2/3); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.77e-01 |
AAGTGGGCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGTGA > NC_002947/4855391‑4855685 | aaGTGGGCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGAtt < 8:210824/149‑1 (MQ=255) ggCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATtcatca < 2:254083/149‑1 (MQ=255) cgcTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAgc < 5:213393/149‑1 (MQ=255) cTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATGAATCAgcgg < 8:160091/149‑2 (MQ=255) cGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATGAATCAGCGGGa < 6:189111/149‑1 (MQ=255) gCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATGAATCAgcggg < 7:203755/147‑3 (MQ=255) cccGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACg > 7:308514/1‑148 (MQ=255) cgcctgcgcctgGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCcgacga < 1:229387/149‑1 (MQ=255) cctgGAGGATGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCTAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCAccc < 1:14898/149‑1 (MQ=255) gaggagGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGAt > 1:170603/1‑149 (MQ=255) aTGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGa < 8:308514/149‑1 (MQ=255) gcggcgATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTg > 6:176463/1‑149 (MQ=255) cgATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCAc > 6:52138/1‑149 (MQ=255) cgATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCAc > 6:52069/1‑149 (MQ=255) atTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCAcccc < 5:52069/148‑1 (MQ=255) tgtgCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGa < 5:52138/149‑1 (MQ=255) tgCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATc < 2:198346/149‑1 (MQ=255) tgCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATc < 5:176463/149‑1 (MQ=255) gCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCg > 7:204741/1‑149 (MQ=255) gCTAAGTCAGTACCCAGTGGCTCAACGCACGACCAAGGGATTTTTTGTGGAGTATACCGCTGATTCATAAGCGCGACGTACTGGTTGGCCCCCCCCGCGACAGCCACCCGCTGCCCCCCGAGCAACTGCCACACCAA‑‑‑GCGATCGGCa > 4:294712/1‑147 (MQ=255) gTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGc < 6:4527/141‑1 (MQ=255) gTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGc > 5:4527/1‑141 (MQ=255) cAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTCCTgg > 8:266530/1‑149 (MQ=255) aGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTggg < 2:170603/149‑1 (MQ=255) ccAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTaca > 1:138183/1‑149 (MQ=255) aGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACAcc > 4:160094/1‑149 (MQ=255) gCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGCGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTAtt > 2:320530/1‑149 (MQ=255) cTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTc < 4:157333/149‑1 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCg > 5:255429/1‑75 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCg < 6:255429/75‑1 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTc > 2:107327/1‑148 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTc > 5:59719/1‑148 (MQ=255) gACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGc > 2:353561/1‑132 (MQ=255) gACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGc < 1:353561/132‑1 (MQ=255) ccGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTg > 2:225666/1‑148 (MQ=255) cGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGc > 6:324501/1‑148 (MQ=255) cAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCa < 1:225666/149‑1 (MQ=255) cAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCa < 2:138183/149‑1 (MQ=255) aaGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGACGCCCCGGCGACAGCACCCCGATGAACCCGGAGCACCTGCCACCCCAG‑‑‑GAGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCAc > 5:158447/1‑149 (MQ=255) aGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAg > 4:130670/1‑36 (MQ=255) aGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAg < 3:130670/36‑1 (MQ=255) aGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGAt < 8:87783/77‑1 (MQ=255) aGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGAt > 7:87783/1‑77 (MQ=255) aGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCAct < 8:204741/149‑1 (MQ=255) aGGGAATTTGTGTGGATTATCCCGCTGATTCATCAGATCGACGTACTGGTTGTCCGACCCGGCGACAGCACCCCGATGCCCCCGGACCAACTGCCACCCCAT‑‑‑GCCAACGGCACGGTGCAGGGCTACACCTATTCAACCCTGCAACCAct > 8:94588/1‑149 (MQ=255) gggATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActg > 7:183332/1‑149 (MQ=255) gggATTTTGTGTGGAGAATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActg > 4:180967/1‑149 (MQ=255) ggATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActgc < 6:59719/149‑1 (MQ=255) aTTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActgctg < 8:183332/149‑1 (MQ=255) tgGAGTATCGCGCTGATTCATCATCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCTATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTTCAACCACTGCTGGACCACg < 6:158447/148‑1 (MQ=255) gAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGc > 7:95384/1‑148 (MQ=255) gAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCACCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGc > 6:28073/1‑148 (MQ=255) gAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGAAGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCAATTCAACCCTGCAACCACTGCTCGACCACGGc > 6:22833/1‑148 (MQ=255) tATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGt < 7:266530/149‑1 (MQ=255) gtcgcGCTGATGAATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGtt > 5:328770/5‑149 (MQ=255) gcGCTGATGAATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCa > 4:226823/2‑149 (MQ=255) ccGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCa > 8:157835/1‑149 (MQ=255) gCTGATTCATCAGCGCGACGTACAGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGCTACCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGc < 1:107327/149‑1 (MQ=255) tGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGt > 5:350231/1‑149 (MQ=255) aTTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGTGa < 3:160094/149‑1 (MQ=255) | AAGTGGGCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAG‑‑‑GCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGTGA > NC_002947/4855391‑4855685 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |