| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,944,738 | C→T | 7.8% | intergenic (+98/+700) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,944,738 | 0 | C | T | 7.8% | 179.4 / 4.3 | 65 | intergenic (+98/+700) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Reads supporting (aligned to +/- strand): ref base C (28/31); new base T (3/2); total (32/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.11e-01 | |||||||||||
ACAAACTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAG > NC_002947/4944591‑4944880 | aCAAACTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGcgccgc < 4:81403/148‑1 (MQ=255) aaCTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑ACAATTGAGATTAAGCGCCGCTCa > 6:111544/1‑148 (MQ=255) tGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACg > 1:242877/1‑149 (MQ=255) aTCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGa > 7:58689/1‑149 (MQ=255) tattAAACAACTTGGATACTAGAAAATACTGCTGACCGAACAACAAGTATAAGTAGTACCAGAAGGCTATTGGATGTCGTTGGTGTTTTTCGTAGGGTAATTTAT‑‑TGATAAC‑CAAATTGAGATTAATCGACTCTCACACGGCTCTCGAt > 8:37250/3‑149 (MQ=255) tCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGa > 3:244783/1‑148 (MQ=255) tAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCtt > 1:88961/1‑149 (MQ=255) tAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCtt > 2:111411/1‑149 (MQ=255) aaaCAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGTTTGAGCGGCGCttaatc < 7:162115/146‑6 (MQ=255) aaaCAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGAt < 4:244783/145‑1 (MQ=255) ttGGATGCTATCCAATACTGCTGTCCTAACAACAATTATAATTCGTACCATCAGGCTATTTGATGTCGTTGGTGTTTTTCGGATTGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGcgccgc < 8:135771/122‑1 (MQ=255) ggATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATcc < 5:111544/148‑1 (MQ=255) aTCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATcc > 6:219574/1‑146 (MQ=255) tAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAAc > 7:17254/1‑149 (MQ=255) gCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAAc < 2:242877/147‑1 (MQ=255) cAATACTGCTGACCGAACCTCAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTTGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCTAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTc < 6:359703/149‑1 (MQ=255) tgACCGAACAACAAGTATAATTCGTACCATCAGGCTCTTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGa < 8:76456/122‑1 (MQ=255) aCCTAAAAAAAATTATAATTTTTAACATAAGGCTTTTTTATGTCGTTTGTGTTTTTCGGATTTTAATTTATACTCTTCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGaaa < 1:111411/146‑1 (MQ=255) ccGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCa < 8:58689/149‑1 (MQ=255) cGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa < 2:88961/149‑1 (MQ=255) cGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATAAC‑AAAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGAAATAACAGAAACGGTCAAGAAACATTCa > 5:27657/1‑148 (MQ=255) aacaacAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACt > 2:207826/1‑149 (MQ=255) aaTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCa > 5:94191/1‑148 (MQ=255) gTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcg > 8:9893/1‑149 (MQ=255) acATCAGGATATTTGATTTCGTTGGTTTTTTTCGTATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGTCTCTCGATATTGATAAATCCCAGAAACGGTCAATAAACTTTCAACTTTCACGCAGCAAATCcggc < 7:37250/147‑1 (MQ=255) aTCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcgg > 7:325774/1‑148 (MQ=255) ggCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCg > 2:58546/1‑149 (MQ=255) tATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCACGCCAATTGAGATTAAGCGCCGATCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCgg > 1:74010/1‑148 (MQ=255) tATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGa > 1:323558/1‑148 (MQ=255) gATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAg > 3:37679/1‑149 (MQ=255) aTGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAgg < 2:323558/149‑1 (MQ=255) aTGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAg > 7:207231/1‑148 (MQ=255) gTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATgg < 6:94191/148‑1 (MQ=255) gTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGt > 4:133808/1‑149 (MQ=255) ttGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGa < 4:55783/136‑1 (MQ=255) ttGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGa > 3:55783/1‑136 (MQ=255) ttGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTc < 6:202642/149‑1 (MQ=255) gtgtTTTTCGGATTGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCgg < 6:27657/148‑1 (MQ=255) gtgtTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCgg < 2:74010/148‑1 (MQ=255) tttttCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAAc > 1:55657/1‑149 (MQ=255) tttCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACTGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGACACGCAGCAAATCCGGAGGAATCCGATAGCAGGATGCTCGGGAAc > 5:346823/1‑147 (MQ=255) tCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAAcgcg < 7:9893/148‑1 (MQ=255) tGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAg < 1:58546/149‑1 (MQ=255) tGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAg < 5:128680/149‑1 (MQ=255) tAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTc < 3:288226/148‑1 (MQ=255) aTTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAg < 5:219574/149‑1 (MQ=255) aT‑‑TGATCAC‑CCAATTGAGATTACGCGCCGCTCAACCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGGCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCgg < 1:336295/148‑1 (MQ=255) aT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCggg > 8:198567/1‑149 (MQ=255) aTCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAg > 7:75711/1‑114 (MQ=255) aTCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAg < 8:75711/114‑1 (MQ=255) aTCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGaa < 8:60838/126‑1 (MQ=255) aTCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGaa > 7:60838/1‑126 (MQ=255) aTCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGgcgc > 5:170222/1‑148 (MQ=255) aC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAg < 7:198567/148‑1 (MQ=255) c‑ccAATTGAGATTACGCGCCGCTCTATCGGCGGTCGATCTTGAGCAATCGGATAAACGGTCTAGAAACTTTCATCTGTCTCTCCGCAAATCCGGCGGATTCGGAAAGCAGGATTGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAgtc < 6:346823/149‑3 (MQ=255) c‑ccAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGc < 8:17254/149‑1 (MQ=255) ccAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCg > 8:92268/1‑149 (MQ=255) cAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGt < 4:37679/149‑1 (MQ=255) ttGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGtata < 1:207826/149‑1 (MQ=255) agaTTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATaca > 8:258690/1‑148 (MQ=255) gatcgaGCGCCGTTTGAGCGGCGCTCGATCTTGAGTAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATaca > 8:301336/6‑147 (MQ=38) gaTTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATAcaca < 7:92268/149‑1 (MQ=255) atcgaGCGCCGTTTGAGCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcgg < 3:355084/80‑1 (MQ=38) atcgaGCGCCGTTTGAGCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcgg > 4:355084/5‑84 (MQ=38) atcgaGCGCCGTTTGAGCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATaca > 6:67996/5‑146 (MQ=38) aTTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGACCGGGCGCAAGGCGTATAcaca < 8:325774/148‑1 (MQ=255) aGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACca < 6:170222/149‑1 (MQ=255) gccgcTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACcag > 1:358617/1‑147 (MQ=255) | ACAAACTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTAT‑‑TGATCAC‑CCAATTGAGATTAAGCGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAG > NC_002947/4944591‑4944880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |