Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,339,897 | C→G | 10.7% | R375R (CGC→CGG) ‡ | pcnB → | poly(A) polymerase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,339,897 | 0 | C | G | 10.7% | 160.8 / 10.9 | 56 | R375R (CGC→CGG) ‡ | pcnB | poly(A) polymerase |
Reads supporting (aligned to +/- strand): ref base C (26/24); new base G (3/3); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
CCTGCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAACGACA > NC_002947/5339750‑5340039 | ccTGCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTgccgcgcc < 5:216817/149‑1 (MQ=255) gCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCa > 6:343289/1‑149 (MQ=255) aGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGc < 6:104412/149‑1 (MQ=255) gAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCg < 5:148430/149‑1 (MQ=255) cAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCTTGCCGCTGCGGCGCGGCag > 6:97273/1‑148 (MQ=255) gggCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCaatc < 2:316643/149‑3 (MQ=255) gTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCTTGCCGCTGCGGCGCGGCAGgcgctc < 5:97273/149‑3 (MQ=255) gccgATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACa < 7:80712/149‑1 (MQ=255) ccGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATgctgct < 7:263490/149‑1 (MQ=255) cGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGctgctg > 1:312726/1‑149 (MQ=255) aTGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACaa > 2:128304/1‑149 (MQ=255) cGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCcgc < 5:364901/149‑1 (MQ=255) ggTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCcgcg > 5:121423/1‑149 (MQ=255) ggCCCACGACCTGATCGCCGAGCAGTGCGCGCTCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGGGAGATCTGGGACATGCATGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTcc < 3:283929/149‑1 (MQ=255) ggCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTcc > 3:182216/1‑149 (MQ=255) ggCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTcc < 1:105622/149‑1 (MQ=255) cTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTa < 8:174853/149‑1 (MQ=255) gATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGCGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACg > 2:148374/1‑149 (MQ=255) gATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGctgctg < 6:136287/121‑1 (MQ=255) gATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGctgctg > 5:136287/1‑121 (MQ=255) ccGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCTGCGGCGCGGCag < 3:161353/97‑2 (MQ=255) ccGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCTGCGGCGCGGCag > 4:161353/1‑96 (MQ=255) ccGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTc < 8:171906/149‑1 (MQ=255) ccGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTc < 5:343289/149‑1 (MQ=255) gAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCct < 2:312726/149‑1 (MQ=255) accAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTcc < 1:128304/145‑1 (MQ=255) tGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCctgctgct > 5:274827/1‑149 (MQ=255) gcgcATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTCGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGt > 1:202156/1‑148 (MQ=255) cATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGaaa < 2:202156/149‑1 (MQ=255) aTCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCgg > 6:112274/1‑149 (MQ=255) tACCCTGCCGATCCGCGAGATCTGGTGCATGCATGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATTCTTCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCctgct < 7:290753/117‑1 (MQ=255) tACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACcgac < 6:121423/148‑1 (MQ=255) tACCCTGCCGATCCGCGAGATCTGCGGCATGCAGGAGCGACTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTcctcct > 8:290753/1‑117 (MQ=255) ccTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTc > 8:167667/1‑91 (MQ=255) ccTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTc < 7:167667/91‑1 (MQ=255) gCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCAGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGATTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTgg > 5:144632/1‑149 (MQ=255) gATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGc > 8:203171/1‑148 (MQ=255) cgcgAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAgtg > 4:108835/1‑149 (MQ=255) gcgAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAgtgg > 6:282324/1‑149 (MQ=255) cgAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAgtggt > 4:340562/1‑149 (MQ=255) cgAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAgtggt > 5:344164/1‑149 (MQ=255) gagaTCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAgtggtg > 7:240891/1‑149 (MQ=255) agaTCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAgtggtg > 3:329592/1‑148 (MQ=255) tCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGAcc > 2:79164/1‑149 (MQ=255) tGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGa > 4:108583/1‑149 (MQ=255) gACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTa < 6:274827/149‑1 (MQ=255) aGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTgg > 3:265854/1‑123 (MQ=255) aGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTgg < 4:265854/123‑1 (MQ=255) aGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGAc < 5:112274/149‑1 (MQ=255) gcgcgcTTGCCGCTGCGGCGCGGCAGGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGga > 4:207014/3‑104 (MQ=37) gcgcgcTTGCCGCTGCGGCGCGGCAGGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGga < 3:207014/102‑1 (MQ=37) ccTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCgg > 8:113605/1‑96 (MQ=255) ccTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCgg < 7:113605/96‑1 (MQ=255) ccTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAAc > 2:230051/1‑148 (MQ=255) ccTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAACg < 4:329592/149‑1 (MQ=255) cTGCCGCGCCGCAGCGGCAAGCGCGCCTACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTTCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAACGa < 4:182216/149‑1 (MQ=255) cTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAACGa > 7:45582/1‑149 (MQ=255) ccgcgccgcAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAACGACa < 7:203171/148‑1 (MQ=255) | CCTGCAGAACCAGGGCGTGCCGCCGATCCCGGCCATGAACGGTGCGGCCCACGACCTGATCGCCGAGCAGTGCGCGCGCATTGCCATCCCCAAGCGTTTTACCCTGCCGATCCGCGAGATCTGGGACATGCAGGAGCGCCTGCCGCGCCGCAGCGGCAAGCGCGCCGACATGCTGCTGGACAACCCGCGTTTCCGCGCCGGTTACGACTTCCTGCTGCTGCGTGAAAGCGCCGGGGAAGAAACCGACGAACTGGGCCAGTGGTGGACCGATTACCAGGACGCAAACGACA > NC_002947/5339750‑5340039 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |