Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,459,560 | T→G | 11.1% | intergenic (+18/‑22) | PP_4795 → / → holA | lipoprotein/DNA polymerase III subunit delta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,459,560 | 0 | T | G | 11.1% | 134.3 / 9.1 | 53 | intergenic (+18/‑22) | PP_4795/holA | lipoprotein/DNA polymerase III subunit delta |
Reads supporting (aligned to +/- strand): ref base T (22/25); new base G (2/4); total (24/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.08e-01 |
CCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCATCCGCAATG > NC_002947/5459415‑5459699 | cccAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCgg > 2:302428/1‑149 (MQ=255) ccAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCggg > 3:353284/1‑149 (MQ=255) ccAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCggg < 1:60475/149‑1 (MQ=255) aCTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGgcgc > 8:81346/1‑149 (MQ=255) cTGGATGTGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGcc > 6:351912/1‑149 (MQ=255) gATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGccc < 7:256332/147‑1 (MQ=255) ctGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGcccctc < 7:294248/148‑3 (MQ=255) aTGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGc < 3:314935/149‑1 (MQ=255) aGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCt < 7:24674/148‑1 (MQ=255) cAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTccc > 2:200109/1‑149 (MQ=255) aGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTcccc < 1:286173/149‑1 (MQ=255) gTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCACCAAGCCGAGACGCCGCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATg < 3:142929/149‑1 (MQ=255) tAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATg > 5:106474/1‑148 (MQ=255) aaaGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGAGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCCAGGGGCGCCCTCGGGCGCCCCGCCGGGTGCCCCTGa > 8:68886/1‑148 (MQ=255) aaGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGaaa < 6:5172/149‑1 (MQ=255) aaGCAGACGACCGCGCCCAAGCCGAACCTGCCGCGCTGGTTGCTGCCCGCCGCCAGCAATCCGAGACGCCGCATCAATCCGCACTGGAATTACTCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGa < 1:276873/148‑1 (MQ=255) gACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGc < 6:120004/149‑1 (MQ=255) gAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTcccc < 4:146622/135‑1 (MQ=255) gcgcgcCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGccc < 1:97714/121‑1 (MQ=255) gcgcgcCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGccc > 2:97714/1‑121 (MQ=255) aaGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGcccc < 6:129274/114‑1 (MQ=255) aaGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCGAGGGCGcccc > 5:129274/1‑114 (MQ=255) gCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGccccc < 7:138942/138‑1 (MQ=255) gCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGccccc > 8:138942/1‑138 (MQ=255) gCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTcaa < 5:351912/149‑1 (MQ=255) ccGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTcaac < 7:81346/149‑1 (MQ=255) cTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCTTTTGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCAc < 1:302428/149‑1 (MQ=255) gCCGCGCTGGAGGCTTCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CCGGCAACTAAGCCCGCGACGCGCGCCCTCGGGCGCCCCCACTCTTCCCCATGAAACTCGCCCCCGCCCAACAGAACAAGCACCt > 8:270308/1‑149 (MQ=255) ccGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGGCCCGCCAGTTGCCCATGAAACACCCCCCCCGCCAACACAACAAGCAccag > 8:345755/1‑147 (MQ=255) ccGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTg < 4:194703/149‑1 (MQ=255) ccGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGCGCGCCCCCCCAGGTCACAAATAAAAAAGCCCCCCCCCCACACAAAAAACAccag > 4:160630/1‑147 (MQ=255) gAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCCTGAAACTCGCCCCCGCCCCACTCAACAAGCACCAGCCAGgcgc > 2:32966/1‑149 (MQ=255) gAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGgcgc < 3:202114/149‑1 (MQ=255) gCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCt < 4:353284/149‑1 (MQ=255) tGCCCGCCGCCAGCAAGCCGAGACGCCTCAGGAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCaa < 3:159839/121‑1 (MQ=255) tGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCt < 3:85874/135‑1 (MQ=255) tGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTACCCAAGAAACTAGCCCCCCCCCAACAcaacaaacccca > 4:85874/1‑129 (MQ=255) cgccAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGt < 7:68886/149‑1 (MQ=255) gCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCGGTTCCCCATGAAACTCGCCCCCGCCCCACTCAACAAGCCCCAGCCAGGCGCCCGGGCACCGGGCTACg > 6:207831/1‑149 (MQ=255) aaGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTg > 2:98822/1‑149 (MQ=255) cGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGc < 1:200109/149‑1 (MQ=255) cTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTAGCCCCCCCCCAACACAACAAGCACCTGCAAGGCGCCCAGGCCCCGGTCTAAGTGGTCAGTGGcgac > 8:112316/1‑149 (MQ=255) aCTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCCACGCCACAACCACCTGCAAGGCGCCCGGGCCCCGGTGTACGTGGTCAGTGGCGCCGCCCCGCTGCggt > 7:240842/1‑149 (MQ=255) gAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACGCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCa < 7:345755/149‑1 (MQ=255) aC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCCACTCAACAAGCACCGGCAAGGCGCCCAGGCCCCGGTGTTCGTGGTCAGTGGCGGCGACCCGCGGCTGTGGCAGGGAg > 5:165858/1‑149 (MQ=255) c‑cGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAgg < 7:18751/145‑1 (MQ=255) c‑cGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTACCCATGAAACTCGCCCCCGCCCCACTCAACAAGCACCAGCAAGGCGCCCAGGCACCGGTCTACGTGGTCAGTGGCGACGCCCCGCAGCTGTGCCAGGAAg > 8:18751/1‑148 (MQ=255) aaCTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTGCCCATGAAACTCGCCCCCGCCCCACTCAACAAGCACCAGCAAGGCGCCCTGGCCCCGGGCTACGTGGGCAGTGGGGGCGCCCCGCTGGGGTGGCCGGAAGCCGCCGa > 1:308203/1‑149 (MQ=255) aCTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGAc < 3:298793/149‑1 (MQ=255) tAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTg < 1:207885/112‑1 (MQ=255) cccGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTAAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCATc > 4:277989/1‑149 (MQ=255) cgcgAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCATCCg < 7:112316/149‑1 (MQ=255) ggggCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCATCCGCAATg > 2:41410/1‑149 (MQ=255) | CCCAACTGGATGAGCTGCAGCGTAAAGCAGACGAGCGCGCCCAAGCCGAAGCTGCCGCGCTGGAGGCTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTAC‑CGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCCAGGAAGCCGCCGACGCCATCCGCAATG > NC_002947/5459415‑5459699 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |