| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 475,309 | G→C | 5.8% | R66G (CGC→GGC) | rpsU ← | 30S ribosomal protein S21 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 475,309 | 0 | G | C | 5.8% | 275.6 / 4.4 | 86 | R66G (CGC→GGC) | rpsU | 30S ribosomal protein S21 |
| Reads supporting (aligned to +/- strand): ref base G (39/42); new base C (3/2); total (42/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
TTGCCCATGATGCAGTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGC > NC_002947/475162‑475457 | ttGCCCATGATGCAGTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAAcggcgcgg > 2:350458/1‑149 (MQ=255) cccATGATGCAGTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAAcggcgcggcg < 4:170183/148‑1 (MQ=255) atgatgCAGTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGt > 4:146057/1‑149 (MQ=255) gTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTcgc > 7:302261/1‑145 (MQ=255) gTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTcgc < 8:302261/145‑1 (MQ=255) gTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACAGCGCCGCGCCGTTcgtctg > 3:49132/1‑144 (MQ=255) ttagCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAAAGACCACTGCCATCGCCCGGGGGTTTGACGGGCAGGGCAGAAGGTTTGCGTTGAACGCCTGGATTATTAAAGACGAACGGCGCGGCGCGGTTCGCGGTg > 6:52495/4‑148 (MQ=255) ttCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACAGCGCCGCGCCGTTcgt < 6:60518/144‑2 (MQ=255) ttCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACAGCGCCGCGCCGTTcgt > 5:60518/1‑143 (MQ=255) gCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACt < 8:242779/149‑1 (MQ=255) aTGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACtt > 8:55933/1‑148 (MQ=255) tGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTc < 6:329579/149‑1 (MQ=255) tGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTc < 2:226834/149‑1 (MQ=255) gAAGCTTGTGCATGGCCTTGAGCTAGCTGCTCAAGTTTGAAACTACCACTGCCATCTCCCGGGGGTTAGACGGGCAGGGCAGAAGCTTTGCGTTGAACGCATGTATTAGTACAGACGAATGTCGCGGCGCTGTTAGCTCTGAACTTTCt > 8:111363/1‑149 (MQ=255) gAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCt > 6:20694/1‑149 (MQ=255) gAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCt > 5:191203/1‑149 (MQ=255) gAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCt > 4:308053/1‑149 (MQ=255) aaGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCt < 3:115884/148‑1 (MQ=255) aaGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCAGGGGGTTAGCGGGGCAGGGCAGAAGCTTTGCGTTGAACTCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCt < 5:152005/148‑1 (MQ=255) cTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGc < 3:146057/149‑1 (MQ=255) ttGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCg > 8:143486/1‑149 (MQ=255) tgCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGa < 1:350458/149‑1 (MQ=255) cAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGAc < 6:342152/148‑1 (MQ=255) cAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACg > 2:179606/1‑149 (MQ=255) cAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACAGCGCCGCGCCGTTcgt > 8:6027/1‑126 (MQ=255) cAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACAGCGCCGCGCCGTTcgt < 7:6027/127‑2 (MQ=255) gggCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACttt > 8:51036/1‑135 (MQ=255) gggCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACttt < 7:51036/135‑1 (MQ=255) ccTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTaa < 5:323711/149‑1 (MQ=255) ttGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTaa > 3:333996/1‑147 (MQ=255) tagctGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAAcagcag > 5:38722/1‑147 (MQ=255) gctgctCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACagcagcagc > 3:52737/1‑149 (MQ=255) ctgctCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAgct > 3:132523/1‑149 (MQ=255) tgctCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAgctg > 8:69125/1‑149 (MQ=255) gctCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCGTGTATTAGTACAGACGACCGGCGCGGCGCTGTTCGCGCGGAACTTTCTTGGCGTGACGCTTAACAGCAGCCgctga > 6:92779/1‑148 (MQ=255) gctCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGATGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAgctgc > 6:87509/1‑149 (MQ=255) tCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCtt > 8:29862/1‑149 (MQ=255) tCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCtt > 3:340716/1‑149 (MQ=255) tttGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTTGTACAGACGAACggcgcggcgc < 7:55780/95‑1 (MQ=255) tttGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACggcgcggcgc > 8:55780/1‑95 (MQ=255) tGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCt > 3:34943/1‑148 (MQ=255) aaaCGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTa < 5:52495/148‑1 (MQ=255) aaCGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACg < 7:22343/149‑1 (MQ=255) aaCGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACg > 8:200190/1‑149 (MQ=255) aCCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGctct < 7:143486/149‑1 (MQ=255) cctcTGCCCTCTCCCGGGGGTTAGCCGGGCAGGGCAGAAGCGTTGCGGTGAACGCCTGTCTTAGTACAGACGATCGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTg < 8:234027/146‑1 (MQ=255) cACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGc < 4:52737/149‑1 (MQ=255) ccATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCg > 8:76879/1‑149 (MQ=255) cATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTCTAATAGTACAGACGAACGCCGCGGCGCTGTTCGCGCTGAACGTTCTTGGCTTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACCCTCTCCGGTAgg > 6:274182/1‑149 (MQ=255) aTCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGc < 1:179606/149‑1 (MQ=255) aTCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGc > 8:46242/1‑149 (MQ=255) aTCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGc < 6:191203/149‑1 (MQ=255) gCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGAc > 6:34647/1‑102 (MQ=255) gCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGAc < 5:34647/102‑1 (MQ=255) gCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTtc < 7:76879/149‑1 (MQ=255) cccGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAAcagcagc < 8:28011/114‑1 (MQ=255) cccGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAAcagcagc > 7:28011/1‑114 (MQ=255) ccGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACTCTCTGCGGTCGGCTtctc < 5:32999/149‑1 (MQ=255) ccGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCg < 6:3741/138‑1 (MQ=255) ccGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCg > 5:3741/1‑138 (MQ=255) gggTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGAGGTCGGCTTCTCGTa > 8:157535/1‑148 (MQ=255) gggtatccGTGCATGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAATGGCGCGGCGCTGTTCGCTCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTaaa < 7:111363/143‑1 (MQ=255) ggTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTaaa < 5:20694/149‑1 (MQ=255) ggTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTaa > 1:322623/1‑148 (MQ=255) ggTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTaa < 2:322623/148‑1 (MQ=255) ccGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑Tcgc < 4:34943/149‑1 (MQ=255) gcagggcagAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGc > 7:240129/1‑148 (MQ=255) gcagAAGCTTTGCGTTGCACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGGCGGCTTCGAGTAAAAC‑TCGCGGCTACGa > 7:328214/1‑148 (MQ=255) gcagAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGaa > 2:93988/1‑149 (MQ=255) cagAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAAc < 7:55933/149‑1 (MQ=255) aaGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACtt > 2:1610/1‑148 (MQ=255) aGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCa < 4:132523/149‑1 (MQ=255) tGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCa < 6:38722/148‑1 (MQ=255) tGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCa < 7:69125/148‑1 (MQ=255) gCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAg < 7:29862/148‑1 (MQ=255) gTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTa > 6:334724/1‑148 (MQ=255) gAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAACC‑TCGCGGCTACGAACTTCAGCCAGTACAcc > 6:280739/1‑149 (MQ=255) gAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTacac < 4:340716/148‑1 (MQ=255) aaCGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGc > 2:313731/1‑139 (MQ=255) aaCGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGc < 1:313731/139‑1 (MQ=255) tATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCttttt < 8:121537/148‑1 (MQ=255) tATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTc < 3:176977/149‑1 (MQ=255) ttAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCg < 5:87509/148‑1 (MQ=255) ttAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCg < 5:92779/148‑1 (MQ=255) aGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCa < 8:240129/148‑1 (MQ=255) gTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAg < 5:274182/148‑1 (MQ=255) gTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAg > 7:39460/1‑148 (MQ=255) aCAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCa > 5:287380/1‑126 (MQ=255) cGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCtt < 3:118592/149‑1 (MQ=255) aCGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGaa < 7:46242/149‑1 (MQ=255) cggcgcggcgCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAACTTCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGaa < 1:93988/149‑1 (MQ=255) cggcgcggcgCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGaaa < 4:351911/149‑1 (MQ=255) ggcgcTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGc < 4:333996/149‑1 (MQ=255) | TTGCCCATGATGCAGTTCGCATGAAGCTTGTGCAGGGCCTTGAGCTAGCTGCTCAAGTTTGAAACGACCACTGCCATCGCCCGGGGGTTAGCCGGGCAGGGCAGAAGCTTTGCGTTGAACGCCTGTATTAGTACAGACGAACGGCGCGGCGCTGTTCGCGCTGAACTTTCTTGGCGTGACGCTTAACAGCAGCAGCTGCTTTGCGCTTACGCTCTGCGGTCGGCTTCTCGTAAAAC‑TCGCGGCTACGAACTTCAGCCAGTACACCGGCTTTTTCGCAGGAGCGCTTGAAACGACGC > NC_002947/475162‑475457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |