Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 51,924 | G→C | 6.8% | L22L (CTC→CTG) ‡ | czcC‑I ← | cobalt‑zinc‑cadmium resistance protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 51,924 | 0 | G | C | 6.8% | 191.0 / 4.2 | 59 | L22L (CTC→CTG) ‡ | czcC‑I | cobalt‑zinc‑cadmium resistance protein |
Reads supporting (aligned to +/- strand): ref base G (27/28); new base C (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.03e-01 |
CTTGCGAGCACCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCACTTGATTAGGTGAT > NC_002947/51780‑52071 | cTTGCGAGCACCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTg < 6:293336/149‑1 (MQ=255) gAGCACCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTTGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGc > 8:124181/1‑148 (MQ=255) gCACCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGAt < 4:117741/149‑1 (MQ=255) cACCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATAGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATc > 2:158202/1‑149 (MQ=255) aCCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCTAGGCCTCTCGTAACCACCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATc < 1:116578/149‑1 (MQ=255) cATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTc > 6:242813/1‑149 (MQ=255) cGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGc < 7:295136/149‑1 (MQ=255) tCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGc > 6:280375/1‑146 (MQ=255) ccAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAgg > 5:232643/1‑142 (MQ=255) ccAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAgg < 6:232643/142‑1 (MQ=255) cAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGTGATGACTGCACAGAGTGCAGCGATCTTc < 1:202698/137‑1 (MQ=255) cAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTc > 2:202698/1‑137 (MQ=255) aaTTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACaga < 6:97404/122‑1 (MQ=255) tCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGt > 2:254502/1‑149 (MQ=255) gCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGNAGCGATCTTCCAGGGCGAGACGGGGGTCtt < 1:29646/148‑1 (MQ=255) gCCTGGCCGCGGCCAGGTCTGGGTTCGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTc < 7:124181/146‑1 (MQ=255) ccTGGCCGCGGCCAGGTCTGGGTTGGCATCCATAGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTgg < 1:158202/149‑1 (MQ=255) ggCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACTCTGTGCAGTCATCt > 7:122177/1‑122 (MQ=255) ggCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACTCTGTGCAGTCATCt < 8:122177/122‑1 (MQ=255) ccGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGt > 3:354023/1‑146 (MQ=255) gTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGt > 3:144250/1‑149 (MQ=255) gTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGt < 6:198352/149‑1 (MQ=255) gTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGt < 5:280375/149‑1 (MQ=255) gTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGt > 1:141620/1‑149 (MQ=255) gCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACgggg > 7:194508/1‑117 (MQ=255) gCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACgggg < 8:194508/117‑1 (MQ=255) cATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACtt > 4:166821/1‑149 (MQ=255) cc‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATg < 4:354023/149‑1 (MQ=255) cc‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATg < 2:362168/149‑1 (MQ=255) c‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATgg < 3:166821/149‑1 (MQ=255) aaGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACTCTGTGCAgtcat < 5:178830/81‑5 (MQ=255) aaGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACTCTGTGCAgtcat > 6:178830/1‑77 (MQ=255) aaGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCAAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGCCATTGCGGTTATACCGGGGCACTTTGAAGGTCCTCg > 1:275846/1‑149 (MQ=255) gCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACtt < 7:176879/149‑1 (MQ=255) gCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACtt > 8:176879/1‑149 (MQ=255) cAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTc < 4:144250/149‑1 (MQ=255) aGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGa < 5:242813/149‑1 (MQ=255) tGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACgggg > 4:2414/1‑83 (MQ=255) gATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATa > 2:193816/1‑147 (MQ=255) cTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCtt > 5:146287/1‑149 (MQ=255) tttGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTg > 2:2825/1‑149 (MQ=255) ggCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCga < 1:214/149‑1 (MQ=255) ggCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGCGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCga < 1:254502/149‑1 (MQ=255) gCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCAAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGc > 1:102434/1‑146 (MQ=255) cTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAAGTTCGATAAAGCTTGGCGAGAACGCCg < 1:193816/149‑1 (MQ=255) atGCAGGCGACATCAACCCAGAGATGAATGCACAGAGTGCAGCGATCTTCCAGGGCGATACGGGGGACTTGGGTAAGACATTGCGGTTATACCTCTTCACTTTGATGGTCCTCGTCCACAAACTTCGAAAAAGCTTGCCGATaaag > 2:317118/2‑144 (MQ=255) gcgcCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAg > 6:181425/1‑149 (MQ=255) aCCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACa > 3:25105/1‑139 (MQ=255) aCCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACa < 4:25105/139‑1 (MQ=255) aCCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGc < 6:146287/149‑1 (MQ=255) ccAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTtat > 6:363159/1‑73 (MQ=255) ccAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTtat < 5:363159/73‑1 (MQ=255) agagATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCa > 8:34145/1‑149 (MQ=255) gACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTc > 1:336127/1‑85 (MQ=255) gACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTc < 2:336127/85‑1 (MQ=255) tGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCTCTTTGATGGTCATCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGATGCCAAGCACCACTTGATTAg > 8:182374/1‑149 (MQ=255) tGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCAc < 6:253016/141‑1 (MQ=255) tGCAAAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCAc > 5:253016/1‑141 (MQ=255) cacaGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCACTTGATTAgg < 7:34145/148‑1 (MQ=255) caGAGTGCAGCGATGTTCCAGGGCGTGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCACTTGATTAGGTGa < 2:102434/149‑1 (MQ=255) agagTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCACTTGATTAGGTGAt > 3:297570/1‑149 (MQ=255) | CTTGCGAGCACCATCAGCGATCCCAATTTCTTGCCTGGCCGCGGCCAGGTCTGGGTTGGCATCCATGGCC‑GTCGAAAGCGCCTGGGGCAAGCTGATGCTTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCGAGAACGCCGAAACAGCTGCCAAGCCCCACTTGATTAGGTGAT > NC_002947/51780‑52071 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |