Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 798,662 | C→A | 8.8% | intergenic (+17/+10) | fklB‑I → / ← PP_0685 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 798,662 | 0 | C | A | 8.8% | 152.9 / 4.6 | 53 | intergenic (+17/+10) | fklB‑I/PP_0685 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (24/24); new base A (2/3); total (26/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.46e-01 |
CAGCTGATGAACGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCACCCTGGTCACGCAGTTCG > NC_002947/798514‑798810 | cAGCTGATGAACGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAggccggcc > 6:167851/1‑149 (MQ=255) gCTGATGAACGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCt < 8:285062/149‑1 (MQ=255) gatgaACGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGcc > 1:350669/1‑149 (MQ=255) atgaACGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGcc < 2:359390/148‑1 (MQ=255) aaCGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGc < 6:28410/148‑1 (MQ=255) aaCGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCAGggccggcc < 4:25233/149‑1 (MQ=255) gcagcaAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCAGGGCCGGCC‑Tccag < 1:74207/147‑4 (MQ=255) ccagcaAATGGCGCCTGTCCGGGCCAAGCGAGCGGGCTAACGGGCCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCGGGTGTTCGACGTCGAGCTGCTCTAGGTTCTGTAATGCCCTGGAGGCCGGCCCTCCCGGCC‑TCAATTc < 8:314560/148‑1 (MQ=255) cagcaAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTc > 6:315143/1‑148 (MQ=255) agcaAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCa < 6:291430/149‑1 (MQ=255) caAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAg > 5:252382/1‑148 (MQ=255) aaaTGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTATAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTc > 6:40105/1‑149 (MQ=255) aaTGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑GCAAGTCCAGTCt > 1:265177/1‑149 (MQ=255) tACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAg < 5:167851/148‑1 (MQ=255) tACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCATGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAgg > 7:323226/1‑149 (MQ=255) cGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTATTGCCCTGGCGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAggg < 8:28936/148‑1 (MQ=255) aGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCa > 6:134073/1‑121 (MQ=255) aGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCa < 5:134073/121‑1 (MQ=255) tGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCgcgc > 8:256519/1‑148 (MQ=255) gCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCcgc > 3:93428/1‑144 (MQ=255) gCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCcgc < 4:93428/144‑1 (MQ=255) ttACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCAGGGCCGGCC‑Tcc > 8:233394/1‑107 (MQ=255) ttACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCAGGGCCGGCC‑Tcc < 7:233394/108‑2 (MQ=255) aCGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAg > 3:193550/1‑146 (MQ=255) ggCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGcagaa > 2:24516/1‑149 (MQ=255) ggCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGcagaa > 7:142276/1‑149 (MQ=255) gcagcaTCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTTCCGGAC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGCTTCCg > 7:234890/1‑148 (MQ=255) agcgTCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCATCTCGACCTTCTGTAATACCATGGAGGCCGGCACTGCCGGCC‑TCAATTCAAGTATGTCCCCCCAGCGCGCAACGCCCCCGCATAGCAGCACAGCAACAGATACCGTAc > 2:97652/1‑149 (MQ=255) agcaTCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGTCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTAc < 5:130971/149‑1 (MQ=255) tCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGt > 8:143456/1‑149 (MQ=255) ccgccgCACAGCGTTCTGGTGTTCGACGTCTCGCTGCTCGAGGTTCTGAAATGCCCTGGCGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTc < 2:265177/149‑1 (MQ=255) ccgccgCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCa > 3:10571/1‑99 (MQ=255) ccgcagCACAGCGTTCTTGGGGTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGtt < 6:252382/148‑1 (MQ=255) gccgcACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCt < 7:256519/149‑1 (MQ=255) ccgcACAGCGTTCTGGTGTTCGACGTCTAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCtt < 5:315143/149‑1 (MQ=255) ccgcACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCtt > 6:259976/1‑149 (MQ=255) cacaGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAg > 3:211917/1‑149 (MQ=255) gTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGc < 2:2336/144‑1 (MQ=255) gTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGc > 1:2336/1‑144 (MQ=255) gtgtTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGtt < 5:259976/148‑1 (MQ=255) ccggcgtgctgctCCCCGTTCTGAATTGCCCTGGCGGCCGGCCTGCCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGGCCGCGCATAGCAGACCAGAAACCGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGaa < 7:302977/142‑1 (MQ=255) aCGTCGTCCTGCTCGACGTTCTGTAAGGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGaa < 2:113358/149‑1 (MQ=255) ctCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCt < 4:211917/149‑1 (MQ=255) gACGTTCTATAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTc < 5:40105/147‑1 (MQ=255) gTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTc < 2:80651/149‑1 (MQ=255) gTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTc > 1:80651/1‑149 (MQ=255) tAATGCCCTGGAGGCCGGCCCTGCCGGCCTTCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGt > 1:214949/1‑149 (MQ=255) tAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTGCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACGCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAg < 8:234890/146‑1 (MQ=255) tAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGTACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTc > 3:23767/1‑149 (MQ=255) tGCCCTGGAGGCCGCCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCAAAGCAGAACAGAAACAGATTCCGTACCAGTTCCATGAGCACACCCGGTTCACTCGAATAAAGCCCGCTCATGTCCAGGTCAcc > 4:248387/1‑149 (MQ=255) cccTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGTACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCAccc < 4:23767/148‑1 (MQ=255) ccTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCAccc < 1:61193/147‑1 (MQ=255) ccTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCCCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCAccc > 2:61193/1‑147 (MQ=255) cTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTAAGc > 6:27775/1‑125 (MQ=255) gccCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCACCCTGGTCACGCAGtt > 3:77694/1‑149 (MQ=255) ccTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCACCCTGGTCACGCAGTtcg > 1:317557/1‑149 (MQ=255) | CAGCTGATGAACGCTGGCAGCAAATGGCGCCTGTACGTGCCAAGCGAGCTGGCTTACGGCGCCCAAGGCGTTGGCAGCATCCCGCCGCACAGCGTTCTGGTGTTCGACGTCGAGCTGCTCGACGTTCTGTAATGCCCTGGAGGCCGGCCCTGCCGGCC‑TCAATTCCAGTCTGTCCCCCCAGGGCGCAACGCCCGCGCATAGCAGAACAGAAACAGATTCCGTACCAGTTCCTTGAGCACCCCCGGTTCACTCGAATTCAGCCCGCTCATGTCCAGGTCACCCTGGTCACGCAGTTCG > NC_002947/798514‑798810 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |