Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,145,441 | T→C | 7.8% | intergenic (‑108/+33) | hemO ← / ← PP_1006 | heme oxygenase/heme receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,145,441 | 0 | T | C | 7.8% | 137.4 / 2.8 | 51 | intergenic (‑108/+33) | hemO/PP_1006 | heme oxygenase/heme receptor |
Reads supporting (aligned to +/- strand): ref base T (22/25); new base C (2/2); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.00e-01 |
GGTTCAGGCGCTGGGAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCACCCTGGCCGTCGTAGCTG > NC_002947/1145294‑1145579 | ggTTCAGGCGCTGGGAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGt < 6:238077/148‑1 (MQ=255) aGGCGCTGGGAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGc < 1:351978/149‑1 (MQ=255) cTGGGAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAaga < 7:199552/149‑1 (MQ=255) tGGGAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATATAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTTGCGGGCACGCCCGCGAagag < 4:183429/149‑1 (MQ=255) ggAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTTGCGGGCACGCCCGCGAAGAGGc < 5:120676/149‑1 (MQ=255) cgcAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCCAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGt < 4:225498/149‑1 (MQ=255) gCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAAc < 5:277163/149‑1 (MQ=255) aTGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGata < 5:238297/149‑1 (MQ=255) aTGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGata > 3:353523/1‑149 (MQ=255) tgggAGTCGTTGGAAAGAGGGGGTCTAGTTACAAGACGTATCAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCATAGAGGCCGGTAGAGACGTAACGCCTCAGATATc < 1:307166/147‑1 (MQ=255) ggAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGcc > 6:337285/1‑120 (MQ=255) ggAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGcc < 5:337285/120‑1 (MQ=255) cTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACca > 4:49707/1‑148 (MQ=255) ttGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCg > 3:2536/1‑114 (MQ=255) ttGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCg < 4:2536/114‑1 (MQ=255) gagGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATAc < 7:34821/149‑1 (MQ=255) gCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGaa < 2:123251/149‑1 (MQ=255) tAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCCCATTGATACCGAAGTTgc > 6:11993/1‑149 (MQ=255) aGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGAt > 3:150131/1‑137 (MQ=255) aGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGAAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGAt < 4:150131/137‑1 (MQ=255) gATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTgcgc > 4:59745/1‑149 (MQ=255) aaGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACAGTGATACCGAAGTTGCGCCCCgg > 3:216018/1‑149 (MQ=255) gACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCa > 8:192222/1‑149 (MQ=255) aaaCAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGt < 7:192222/149‑1 (MQ=255) cctagaCAGTAAAAAAAGCCGTGATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCTTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAACCCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCg < 5:212651/145‑1 (MQ=39) agaCAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGt > 4:86640/1‑149 (MQ=255) aGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTtggc > 5:219361/1‑149 (MQ=255) tAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTtgg < 3:233258/146‑1 (MQ=255) tAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTtgg > 4:233258/1‑146 (MQ=255) aaaGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGctggctgg < 3:59745/149‑1 (MQ=255) aaaGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATACCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGctggctgg > 3:244634/1‑149 (MQ=255) gCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATg < 4:34917/119‑1 (MQ=255) cGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGgctggctgtgaccc < 3:86640/149‑7 (MQ=255) cGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTcac < 6:219361/149‑1 (MQ=255) ttGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGTGACCCAgccag > 1:315252/1‑147 (MQ=255) tGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTg > 8:173140/1‑98 (MQ=255) tGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTg < 7:173140/98‑1 (MQ=255) ttGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGTGACCCAgccagccaac < 2:315252/149‑8 (MQ=255) ttGCCAGTACCGGCCTCTTCGCGGGCGTACCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTc < 4:242733/136‑1 (MQ=255) ttGCCAGTACCGGCCTCTTCGCGGGCGTACCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTc > 3:242733/1‑136 (MQ=255) ccAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCAccc < 3:49707/148‑1 (MQ=255) ccAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCAcc > 2:324903/1‑147 (MQ=255) ccAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCAcc < 1:324903/147‑1 (MQ=255) cAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTgc > 7:58813/1‑91 (MQ=255) cAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTgc < 8:58813/91‑1 (MQ=255) cAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTtg < 6:335090/120‑1 (MQ=255) cAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTtg > 5:335090/1‑120 (MQ=255) ctctTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCACCCTGGCCGTCGTAg > 6:173232/1‑149 (MQ=255) tctTCGCGGGCGTGCGCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGGCGATGTTGGCTGGCTGGGTCACAGCCGCCTCCCCCTGGCCGTCGTAGc > 3:254328/1‑149 (MQ=255) tctTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCACCCTGGCCGTCGTAGc > 3:358966/1‑149 (MQ=255) tttgcgGGCACGCCCGCGAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCACCCTGGCCGTCGTAGCTg > 2:361209/4‑149 (MQ=255) tttgcgGGCACGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCACCCTGGCCGTCGTAGCTg > 8:90623/4‑149 (MQ=255) | GGTTCAGGCGCTGGGAGCGCAGGGCTGGGCGGTCGGTCATGGGGGAGTCCTTGGAAAGAGGGCGTCTAGATACAAGACGAAACAGCGGGAGCGAGACAGTAAAAAAAGCCGGTATTTGCGTTGCCAGTACCGGCCTCTTCGCGGGCGTGCCCGCAAAGAGGCCGGTACAGACGTAACGCCTCAGATATCCCAAACCACATTGATACCGAAGTTGCGCCCCGGCATGGTCAGGCGGTCGATGTTGGCTGGCTGGGTCACAGCCGCCTCACCCTGGCCGTCGTAGCTG > NC_002947/1145294‑1145579 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |