| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,251,957 | A→G | 6.9% | Y285H (TAC→CAC) | PP_1095 ← | electron transport complex protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,251,957 | 0 | A | G | 6.9% | 164.5 / 2.0 | 58 | Y285H (TAC→CAC) | PP_1095 | electron transport complex protein |
| Reads supporting (aligned to +/- strand): ref base A (30/24); new base G (2/2); total (32/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
CCACATCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGAGTCCGACCCC > NC_002947/1251817‑1252105 | ccACATCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGa < 5:24507/143‑1 (MQ=255)ccACATCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGa > 6:24507/1‑143 (MQ=255)ccACATCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCa > 1:355653/1‑149 (MQ=255) caTCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCAccc < 6:200785/149‑1 (MQ=255) caTCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCAccc < 2:262296/149‑1 (MQ=255) ccGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTTCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGt > 3:55439/1‑149 (MQ=255) ttCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAg < 4:55439/149‑1 (MQ=255) ttCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAg > 6:10964/1‑149 (MQ=255) cATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGc < 2:355653/148‑1 (MQ=255) tCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGca > 5:57025/1‑147 (MQ=255) tgcctgcTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTgg < 6:57025/149‑1 (MQ=255) tgctgACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACCGCTTGGcc > 4:326516/1‑147 (MQ=255) ctgACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCAc > 4:202701/1‑126 (MQ=255) ctgACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCAc < 3:202701/126‑1 (MQ=255) aCGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAgtcgt > 2:182720/1‑149 (MQ=255) acaGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTggg > 1:208021/1‑149 (MQ=255) acaGCCATGCGCTCGAGTGACGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCTATCCGGATAGCTGACACAGGTACGAATCAGGAAGATGAGCACCACTGTTCACAAGACGAAGCACAGCTTGGCCCAGTCGTC‑TCTgcg > 4:206931/1‑147 (MQ=255) caGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTgggg < 2:208021/149‑1 (MQ=255) gCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGcc < 7:345129/149‑1 (MQ=255) tGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGac < 8:269396/149‑1 (MQ=255) gcgcTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTAGTC‑TCTGGGGCCGGaca > 3:100555/1‑149 (MQ=255) gcTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACt < 3:337550/149‑1 (MQ=255) tCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTgg > 8:271240/1‑149 (MQ=255) tGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCaa < 5:10964/149‑1 (MQ=255) gAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATg > 7:21948/1‑148 (MQ=255) aaaGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGCACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATg > 3:290578/1‑146 (MQ=255) ggTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGaagaag < 8:21948/149‑1 (MQ=255) atcaGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGaagaag < 1:17128/144‑1 (MQ=255) atcaGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGaagaag > 2:17128/1‑144 (MQ=255) atcaGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGc > 7:84654/1‑149 (MQ=255) atcaGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCACCACGTACGAATCACCTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGc > 6:182190/1‑149 (MQ=255) gcagGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGc < 7:271240/149‑1 (MQ=255) ggCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCg > 3:208380/1‑149 (MQ=255) tGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAAc < 4:100555/149‑1 (MQ=255) aTCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGt > 3:36417/1‑149 (MQ=255) aTCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAATCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGt > 7:286345/1‑149 (MQ=255) aTCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCAAGTCGTC‑TCTGGGGCCGGACACTCGCTCGGTCGCAATCAAGAAGCCTGCCAGCATGGTCGAGCCCGAAAACAGGt > 8:79258/1‑149 (MQ=255) tCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGAAATGAAGAAGGCTGCCAGCATGGACGAGCCGGAAAACAggag > 8:345574/1‑147 (MQ=255) tCCGGATAGCTGCCCCAGGCACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTg < 4:290578/149‑1 (MQ=255) ctgATAGCTGCCCCAGGTACTAATCAGGTAGATGAGCACCCCTGTTCGCACGCCGAAGCACAGCTTGGCCGAGTCGTC‑TATGGGGCCTGAGACTGGCTCTTTCGCAATGAAGAATGCTGCCAGCATTGTCGAGCCGGAAAACAGGTgc < 1:84716/146‑1 (MQ=255) gATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTgcag > 1:54176/1‑148 (MQ=255) gATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGG‑CGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTgcagc > 5:195981/1‑148 (MQ=255) ccccAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGc > 4:76504/1‑147 (MQ=255) gTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCAtt > 5:338146/1‑149 (MQ=255) gTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCT‑GGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTg < 1:182720/149‑1 (MQ=255) tACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTg < 2:54176/149‑1 (MQ=255) tACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTg < 4:36417/149‑1 (MQ=255) tACGAATCAGGTAGATGAGCACCCCTGTGCCCAGGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACAGTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTg < 7:79258/149‑1 (MQ=255) gAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTCAAATGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCCAGCCGGAAAACAGGTGCAGCAAAGGCTAGCCATTgta > 1:102875/1‑147 (MQ=255) gAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGAg > 3:33647/1‑149 (MQ=255) aaTCAGGTGGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGa < 4:78808/147‑1 (MQ=255) aaTCAGGTGGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGa < 4:83907/147‑1 (MQ=255) aaTCAGGTGGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGa > 3:83907/1‑147 (MQ=255) aaTCAGGTGGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGa > 3:78808/1‑147 (MQ=255) aGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGAGTccta > 6:266768/1‑147 (MQ=255) aGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGAGTCCg < 6:338146/148‑1 (MQ=255) ggTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACt > 3:172070/1‑68 (MQ=255) ggTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACt < 4:172070/68‑1 (MQ=255) aGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGAGTCCGAcccc > 6:138372/1‑149 (MQ=255) | CCACATCCCGAACCCCGCGCTTCATCGGGCTGCCTGCTGACGCTGCACAGCCATGCGCTCGAGTGCCGGTGCGAAAAGGTTCATCAGCAGGACGGCGAACGCGGTGCCATCCGGATAGCTGCCCCAGGTACGAATCAGGTAGATGAGCACCCCTGTTCCCACGCCGAAGCACAGCTTGGCCCAGTCGTC‑TCTGGGGCCGGACACTGGCTCGGTCGCAATGAAGAAGGCTGCCAGCATGGTCGAGCCGGAAAACAGGTGCAGCAAAGGCGAGCCATTGGAGTCCGACCCC > NC_002947/1251817‑1252105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |