Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,342,252 | A→T | 6.8% | intergenic (‑36/+19) | PP_1166 ← / ← PP_1167 | DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,342,252 | 0 | A | T | 6.8% | 175.0 / 3.1 | 59 | intergenic (‑36/+19) | PP_1166/PP_1167 | DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM |
Reads supporting (aligned to +/- strand): ref base A (29/26); new base T (2/2); total (31/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 |
CGATGCGCGCGGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGCCAA > NC_002947/1342108‑1342398 | cGATGCGCGCGGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGTCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCg < 6:52512/149‑1 (MQ=255) aTGCGCGCGGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGc < 6:319202/149‑1 (MQ=255) ggTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCTTGGCGGcccctg < 6:95911/138‑3 (MQ=255) ggTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCTTGGCGGcccctg > 5:95911/1‑136 (MQ=255) ggTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCTTGGCGGcccctg < 6:100947/138‑3 (MQ=255) ggTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCTTGGCGGcccctg > 5:100947/1‑136 (MQ=255) gTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACa < 3:10124/149‑1 (MQ=255) gTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAAATAc < 5:294632/148‑1 (MQ=255) gTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAACCGGCCCCCGGTCATAATTACa > 3:97833/1‑149 (MQ=255) ttGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAg < 2:154720/149‑1 (MQ=255) gAATGAACAGGCCAGGAGGGCGAGCAGGGTGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCg < 5:195860/121‑1 (MQ=255) gAATGAACAGGCCAGGAGGGCGAGCAGGGAGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCg > 6:195860/1‑121 (MQ=255) aCAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAgg > 7:240008/1‑147 (MQ=255) aGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGc > 4:253461/1‑149 (MQ=255) aGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCACCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGc > 6:101818/1‑149 (MQ=255) ggcgggCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGc < 5:244266/146‑1 (MQ=255) gaggGCGAGCAGGGCGATGGCTAGTTTGCGGGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCg < 5:111247/149‑1 (MQ=255) aggGCGAGCAGGGCGATGGGTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGTAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCga < 5:39048/149‑1 (MQ=255) aggGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCgg > 4:290695/1‑148 (MQ=255) cGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCACCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATc < 5:101818/149‑1 (MQ=255) gAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCg < 4:140537/149‑1 (MQ=255) aGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCCCCACGCTAGGCAGCCACAGCGAGATCGCTg > 4:315164/1‑148 (MQ=255) tGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGGGATCGCTGGAATGTaa < 3:290695/149‑1 (MQ=255) ggCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTa < 6:232823/105‑1 (MQ=255) ggCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTa > 5:232823/1‑105 (MQ=255) ggCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTACAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAg > 8:9177/1‑149 (MQ=255) tAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCa > 5:177184/1‑149 (MQ=255) gTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCAt > 5:31835/1‑148 (MQ=255) gggAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAg > 6:91081/1‑149 (MQ=255) gggAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAg > 6:85898/1‑149 (MQ=255) ggAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGc < 6:31835/149‑1 (MQ=255) gAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCa > 5:290820/1‑149 (MQ=255) aaaaGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTATGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCAATCAGCAc > 2:32765/1‑149 (MQ=255) gCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAAt < 1:175834/124‑1 (MQ=255) gCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAAt > 2:175834/1‑124 (MQ=255) gTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGaa > 8:197830/1‑148 (MQ=255) gTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAc < 8:240008/149‑1 (MQ=255) cAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑Agc < 6:290820/149‑1 (MQ=255) aGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑Agcg > 6:323362/1‑149 (MQ=255) cGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCa < 6:177184/149‑1 (MQ=255) aggaggGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAgg < 5:323362/149‑1 (MQ=255) tgtgCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAgc > 7:133101/1‑149 (MQ=255) tgCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAgcgc > 8:198541/1‑149 (MQ=255) cAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCt > 6:105448/1‑149 (MQ=255) gATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACNAGCGCCAGGTAGAACTGCATCAGCGCCTTc < 1:32765/149‑1 (MQ=255) tttGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCg > 8:173306/1‑149 (MQ=255) gCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACt > 5:172932/1‑149 (MQ=255) cAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACt < 3:253461/148‑1 (MQ=255) aaGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCa > 1:160082/1‑102 (MQ=255) aaGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCa < 2:160082/102‑1 (MQ=255) aaGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTc > 6:145960/1‑148 (MQ=255) agagCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGTAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGa < 5:91081/149‑1 (MQ=255) agagCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGa < 5:85898/149‑1 (MQ=255) agagCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGa < 5:145960/149‑1 (MQ=255) agCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATa < 6:172932/149‑1 (MQ=255) gccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGcc > 7:50297/1‑148 (MQ=255) gccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGcc > 5:164857/1‑148 (MQ=255) ccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGCCaa > 4:115506/1‑149 (MQ=255) ccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGCCaa > 3:125750/1‑149 (MQ=255) | CGATGCGCGCGGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAAC‑AGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGCCAA > NC_002947/1342108‑1342398 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |