Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,389,946 | C→G | 7.8% | A23G (GCC→GGC) | PP_1212 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,389,946 | 0 | C | G | 7.8% | 161.5 / 3.7 | 51 | A23G (GCC→GGC) | PP_1212 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (26/21); new base G (2/2); total (28/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 |
CTTGCTAACCATATATAATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAGGCGGCGACAAGGCC > NC_002947/1389807‑1390094 | cttgctAACCATATATAATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCgccgcgccgc < 4:118445/148‑1 (MQ=255) ctAACCATATATAATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATc > 2:291402/1‑149 (MQ=255) ccATATATAATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGAtt > 4:357942/1‑149 (MQ=255) cATATATAATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTg > 7:47071/1‑149 (MQ=255) tataATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCg > 4:182169/1‑149 (MQ=255) ataATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGGCGCGGCGCTGATcttctg > 1:145217/1‑139 (MQ=255) ataATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGGCGCGGCGCTGATcttctg < 2:145217/144‑6 (MQ=255) aTCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCt < 8:209476/149‑1 (MQ=255) ccGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCTCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGa < 6:10537/135‑1 (MQ=255) ccGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGa > 5:10537/1‑135 (MQ=255) ccGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGt < 1:291402/148‑1 (MQ=255) tttttGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGAt < 7:342554/132‑1 (MQ=255) tttttGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGAt > 8:342554/1‑132 (MQ=255) ctgcCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCgg < 5:286992/148‑1 (MQ=255) ccccGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTg > 7:178416/1‑148 (MQ=255) ccccGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTg > 1:160930/1‑148 (MQ=255) cGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTc < 4:175528/149‑1 (MQ=255) ttATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCgg > 8:243699/1‑149 (MQ=255) ttATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCAAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCgg > 8:270019/1‑149 (MQ=255) gagaCACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTg > 3:267408/1‑120 (MQ=255) gagaCACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTg < 4:267408/120‑1 (MQ=255) agaCACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGc < 8:47071/149‑1 (MQ=255) ccATGCCCCTTTATGACTATCAATGTGTCGTCCTGCGAGCCCCGCATGGAAGTGCTGCAGAAAAACAGCGCCGCGCCGCTGAACAATTGCCCGGCCTGTCAGGCGCCGGCAATGAAAAAGCTGATGTCGTTGCCAGGCTTTCGCCTGAg > 1:15894/1‑149 (MQ=255) tttATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTc > 3:59720/1‑132 (MQ=255) tttATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTc < 4:59720/132‑1 (MQ=255) cTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTa > 1:65506/1‑147 (MQ=255) cTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTa < 2:65506/147‑1 (MQ=255) tATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCa < 6:1280/83‑1 (MQ=255) tATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCa > 5:1280/1‑83 (MQ=255) tCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTg > 5:61135/1‑94 (MQ=255) tCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTg < 6:61135/94‑1 (MQ=255) aTGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAAcc > 5:214036/1‑148 (MQ=255) cGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTc < 8:178416/149‑1 (MQ=255) cTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGcc < 4:125850/113‑1 (MQ=255) cTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGcc > 3:125850/1‑113 (MQ=255) cGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGc < 4:88767/98‑1 (MQ=255) gAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCgg < 6:214036/149‑1 (MQ=255) aGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCggg < 2:160930/149‑1 (MQ=255) aGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCggg < 8:342740/149‑1 (MQ=255) gCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCgggg < 3:182169/149‑1 (MQ=255) aaGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAg < 6:24890/131‑1 (MQ=255) aaGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAg > 5:24890/1‑131 (MQ=255) aGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATc < 7:243699/149‑1 (MQ=255) tgcAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCg > 6:7249/1‑129 (MQ=255) gcAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAg > 3:117101/1‑149 (MQ=255) cAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAgg > 5:127852/1‑149 (MQ=255) agaagaTCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAggc > 6:231065/1‑149 (MQ=255) agaagaTCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAggc > 6:22018/1‑149 (MQ=255) gaagaTCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCTCTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAGAAGAATCTGGCAggcg > 7:267997/1‑149 (MQ=255) aagaTCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAggcgg > 8:336850/1‑149 (MQ=255) aTCAGCGGCGCGGCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCggg > 5:112875/1‑123 (MQ=255) aTCAGCGGCGCGGCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCggg < 6:112875/123‑1 (MQ=255) gcgccgcgccGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAGGCGGCGACAAg > 7:136375/1‑149 (MQ=255) ccgcgccgcTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAGGCGGCGACAAGGcc < 7:336850/149‑1 (MQ=255) | CTTGCTAACCATATATAATCCCGCTTTTTGCTGCCCCCCGGCAGCCAGCGTTATGGTTGACGAGAGACACCCATGCCCCTTTATGACTATCAATGTG‑CGTCCTGCGAGCACCGCATGGAAGTGCTGCAGAAGATCAGCGCCGCGCCGCTGATCGATTGCCCGGCCTGTCAGGCGCCGGCACTGAAAAAGCTGCTGTCGGTGCCAGGCTTTCGCCTGAGCGGTAACGGTTGGTACGAAACCGACTTCAAGACCGGGGCGAAAAAGAATCTGGCAGGCGGCGACAAGGCC > NC_002947/1389807‑1390094 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |