Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,414,587 | G→C | 7.5% | intergenic (‑119/‑141) | PP_1236 ← / → dapA‑I | glycine cleavage system transcriptional repressor/4‑hydroxy‑tetrahydrodipicolinate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,414,587 | 0 | G | C | 7.5% | 165.0 / 4.4 | 53 | intergenic (‑119/‑141) | PP_1236/dapA‑I | glycine cleavage system transcriptional repressor/4‑hydroxy‑tetrahydrodipicolinate synthase |
Reads supporting (aligned to +/- strand): ref base G (26/23); new base C (2/2); total (28/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.89e-01 |
ATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAGTTACATGATTG > NC_002947/1414441‑1414734 | aTTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCcggcg > 5:358117/1‑149 (MQ=255) gTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGc > 2:17604/1‑149 (MQ=255) gTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTAGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGc > 8:272912/1‑149 (MQ=255) ttCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGcc > 1:61598/1‑149 (MQ=255) ggTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATc > 2:278282/1‑148 (MQ=255) ggACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAg < 3:73715/149‑1 (MQ=255) cATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGc > 7:188560/1‑149 (MQ=255) aTGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCaaa < 8:83308/144‑1 (MQ=255) aTGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCaaa > 7:83308/1‑144 (MQ=255) tGCAGCATTCCTGAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGcc > 3:79142/1‑148 (MQ=255) gcagcaTTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGcc > 4:329442/1‑147 (MQ=255) gcagcaTTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGcc > 3:165207/1‑147 (MQ=255) cTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCg > 6:287656/1‑148 (MQ=255) cTAAAGAGATGAGCGGTCGGCACAGGACGGACAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCAAGCTAGGTCTTGGACGCTGGCGGGCAGCAAGGTCGACGGCCCGGCGGGCCCCGCTGCACCAAACAAACGGCCAAGGGTAGcc > 8:51708/1‑147 (MQ=255) tAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGa > 3:85141/1‑148 (MQ=255) gaaaGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGCCAGCGCCCGGGGCTCGCATCCGAGGTCTTGGCCGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGa > 3:85149/2‑148 (MQ=255) gCGATGAGCGGTCGGCACAGGACGGGCATATGCGTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCTGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑Taa < 4:85149/149‑1 (MQ=255) gCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑Taa < 4:85141/149‑1 (MQ=255) ggATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTTGCATGCGAGGGCTTGGACGCTGGCGGGGAGCATGGTCGACGGCCCGGCGGGCCGCGCTGGACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAg < 7:51708/148‑1 (MQ=255) cGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAg > 3:347580/1‑149 (MQ=255) gATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAgc < 4:347580/149‑1 (MQ=255) aTGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAgcc < 2:61598/149‑1 (MQ=255) tGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAgccg < 8:188560/149‑1 (MQ=255) aGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAATGGCCAAGGGTAGCGAAA‑TAAgccgcc > 6:204385/1‑149 (MQ=255) aGGACGGGCAATTGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGAGGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGaa < 5:59777/127‑1 (MQ=255) aGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCt > 2:89397/1‑149 (MQ=255) aGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCt < 2:11990/149‑1 (MQ=255) gACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCcgc > 8:165323/1‑93 (MQ=255) gACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAACGTCGACGGCCCGGCGGGCcgc < 7:165323/93‑1 (MQ=255) gggCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCAcc > 2:100321/1‑149 (MQ=255) aTGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTg > 2:351127/1‑149 (MQ=255) cctcctGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCtt > 7:100337/1‑149 (MQ=255) gTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAgg < 7:291477/99‑1 (MQ=255) gTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAACGGCCAAgg > 8:291477/1‑99 (MQ=255) cAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCaa < 1:17604/149‑1 (MQ=255) ggCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGt < 1:351127/149‑1 (MQ=255) ggCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGt < 1:100321/149‑1 (MQ=255) ccGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAACTAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCg < 1:89397/149‑1 (MQ=255) gggCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGc < 4:79142/149‑1 (MQ=255) cATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGt < 5:287656/149‑1 (MQ=255) cGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGTGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTAcc < 7:272912/148‑1 (MQ=255) cTTGGACGCTGGCGGGGAGGAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCg < 6:358117/149‑1 (MQ=255) ttGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGc > 1:52310/1‑149 (MQ=255) ttGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGc > 3:325228/1‑149 (MQ=255) ggACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCg < 4:165207/146‑1 (MQ=255) gCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTc < 3:329442/149‑1 (MQ=255) ggAGCAAGGTCGACGGCCCGGCGGGCCGCGCTTCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGc < 5:204385/149‑1 (MQ=255) ggTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAg > 5:184763/1‑147 (MQ=255) gacgcgcGGCCCCCCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCa < 7:318632/143‑1 (MQ=255) gTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAg > 2:166693/1‑149 (MQ=255) agcgcGGCCCGCCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTc < 4:73098/132‑1 (MQ=255) agcgcGGCCCGCCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTc > 3:73098/5‑136 (MQ=255) agcgcGGCCCGCCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAGt > 1:329464/5‑149 (MQ=255) ggCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAGTTACAt > 2:342068/1‑149 (MQ=255) cggcggGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAGTTACATGAtt < 1:166693/149‑1 (MQ=255) ggcggGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAGTTACATGATTg > 8:78934/1‑149 (MQ=255) | ATTGTTCGCGGACGGTGGGGGTGGACATGCAGCATTCCTAAAGCGATGAGCGGTCGGCACAGGACGGGCAAATGCCTCCTGTCGGCAGGGCCCGGGGCTCGCATGCGAGGTCTTGGACGCTGGCGGGGAGCAAGGTCGACGGCCCGGCGGGCCGCGCTGCACCGATCAAAGGGCCAAGGGTAGCGAAA‑TAAGCCGCCGAGGGGAATGCTCCACCCGCCTGCTTCGCTTGTGCAAGGTCGATGCCCCCAGTACCATTACCGCTCTCTTTTTCCGGCAGGAGCAGTTACATGATTG > NC_002947/1414441‑1414734 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |