Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 146,128 | T→A | 13.0% | intergenic (+33/‑115) | gltP → / → PP_0138 | glutamate/aspartate‑proton DAACS transporter/membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 146,128 | 0 | T | A | 13.0% | 130.3 / 8.0 | 52 | intergenic (+33/‑115) | gltP/PP_0138 | glutamate/aspartate‑proton DAACS transporter/membrane protein |
Reads supporting (aligned to +/- strand): ref base T (23/22); new base A (3/4); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGTCATTGCTCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTCAACGGCCTTTGGCTCG > NC_002947/145981‑146264 | ggTCATTGCTCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACtt < 1:128836/148‑1 (MQ=255) aTTGCTCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑Cgg > 4:210219/1‑149 (MQ=255) aTTGCTCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑Cgg > 4:181284/1‑149 (MQ=255) cTCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCt > 6:165961/1‑149 (MQ=255) tCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGAAGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCtt > 3:108530/1‑149 (MQ=255) gCTGGGCAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGTAGGGAGCTGTAGTGGTTGGCGAACCCGCCAAGCGCTGAGCCTGATGGCTGGTTGACCAAAAGCCCCGACAAGT‑CGGGGCtct < 7:298137/148‑3 (MQ=255) gCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCtttt > 4:117664/1‑149 (MQ=255) ccgggAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACAAGT‑CGGGGCtcttg < 2:120020/147‑2 (MQ=255) cTGGCAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGGTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCttttt < 1:298978/149‑1 (MQ=255) aaGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑Cgggg > 3:111804/1‑138 (MQ=255) aaGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑Cgggg < 4:111804/138‑1 (MQ=255) cATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGc > 6:54402/1‑149 (MQ=255) cATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGc < 3:148726/149‑1 (MQ=255) aTGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACAAGT‑CGGGGCtctt > 5:296707/1‑138 (MQ=255) aTGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACAAGT‑CGGGGCtctt < 6:296707/138‑1 (MQ=255) gacgCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCt < 5:54402/149‑1 (MQ=255) gcgGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGa < 3:181284/149‑1 (MQ=255) gggCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑cc < 3:117664/149‑1 (MQ=255) aGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑Caa < 3:210219/149‑1 (MQ=255) aGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAgg > 1:248861/1‑149 (MQ=255) acGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGTCCGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGc < 1:79933/145‑1 (MQ=255) acGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGc > 2:79933/1‑144 (MQ=255) cGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAg > 4:343858/1‑127 (MQ=255) cGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAg < 3:343858/127‑1 (MQ=255) cGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTca < 1:262900/144‑1 (MQ=255) cGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTca > 2:262900/1‑144 (MQ=255) cGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGc > 4:326729/1‑149 (MQ=255) gagaAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGACACAGGCt > 8:160204/1‑149 (MQ=255) aGCTGTAGTGGTTGGCGAGACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTc < 5:88610/118‑1 (MQ=255) aGCTGTAGTGGTTGGCGAGACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTc > 6:88610/1‑118 (MQ=255) gTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTcac < 2:4286/129‑1 (MQ=255) tAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTattatt > 7:307213/1‑149 (MQ=255) tGGTTGGCGAAACCGCCAAGCGCTTAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCg < 8:51250/148‑1 (MQ=255) gTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCggg < 2:115244/148‑1 (MQ=255) gTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTCCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCggg > 1:115244/1‑148 (MQ=255) gTTGGCGAAACCGCCAAGCGCTGAGCCTGAAGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCtgg < 4:108530/148‑1 (MQ=255) ttGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCa < 3:326729/149‑1 (MQ=255) gAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATGGCCAGTCACAGGCTTCGATACGCTATTATTCGTGCACtttt < 6:180439/149‑1 (MQ=255) gtttcGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACtttt > 5:17365/5‑148 (MQ=255) aaaCCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTc < 7:334456/149‑1 (MQ=255) ccAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAGTAAAAAGGGATGCTGAGAAAAAGCTCGCGATCGCCAGTCACAGGCTGCGATAAGCTATTATTAGGGCACttt > 1:297729/1‑149 (MQ=255) gcgcTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGc > 4:36088/1‑132 (MQ=255) gcgcTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGc < 3:36088/132‑1 (MQ=255) gcgcTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACa < 5:165961/149‑1 (MQ=255) gCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACg > 4:116143/1‑146 (MQ=255) gCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACg < 3:116143/146‑1 (MQ=255) aTGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTc > 3:213938/1‑148 (MQ=255) tttGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGGG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTAACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTCAACGGCCt > 4:202163/1‑149 (MQ=255) aaaaagCCCCGACAAGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTcac > 3:259341/5‑81 (MQ=38) aaaaagCCCCGACAAGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTcac < 4:259341/77‑1 (MQ=38) aaaaagCCCCGACAAGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTCAACGGCCTTTGGCt > 2:353370/5‑149 (MQ=255) agagCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTCAACGGCCTTTGGCTCg > 2:79711/1‑149 (MQ=255) agagCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTCAACGGCCTTTGGCTCg < 4:213938/149‑1 (MQ=255) | GGTCATTGCTCGCTGGGAAGGCATGTACGACGCGGTCAAGGGCGAGCAGTACTACGCCTCGCTGATGGCCGAGAAGCAGGGAGCTGTAGTGGTTGGCGAAACCGCCAAGCGCTGAGCCTGATGGCTGTTTGACCAAGAGCCCCGACTTGT‑CGGGGCTTTTTGTTATCTGCGAGATCTTGAG‑‑‑‑CCGCG‑‑CCT‑A‑CAAAGGCTCGCGATCGCCAGTCACAGGCTGCGATACGCTATTATTCGGGCACTTTTCAGGGGGAACATACGGATGCTCAACGGCCTTTGGCTCG > NC_002947/145981‑146264 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |