Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,517,283 | T→G | 8.0% | V158G (GTG→GGG) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,517,283 | 0 | T | G | 8.0% | 168.2 / 4.5 | 60 | V158G (GTG→GGG) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
Reads supporting (aligned to +/- strand): ref base T (23/32); new base G (3/2); total (26/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.44e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACCAACGGCAAGACAAGTGTTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGTGATGACCAACCTGTCCCGCGACC > NC_002947/1517138‑1517420 | aCCAACGGCAAGACAAGTGTTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGc > 2:109217/1‑148 (MQ=255) ccAACGGCAAGACAAGTGTTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCaa < 3:319016/149‑1 (MQ=255) aaGACAAGTGTTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCt > 6:138453/1‑149 (MQ=255) gtgtTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGGGCAATCGACCCTCAACGAc < 6:103722/149‑1 (MQ=255) gtgtTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCACGGCAATCgggtc > 8:258799/1‑137 (MQ=255) gtgtTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCACGGCAATCgggtc < 7:258799/141‑5 (MQ=255) tgtTACCCAACTGGTCGCCCTGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGAcc < 5:45447/149‑1 (MQ=255) ttACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTc < 5:155150/149‑1 (MQ=255) aCCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTc > 6:197415/1‑147 (MQ=255) cccAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCaa < 1:331480/148‑1 (MQ=255) ccAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAg > 1:77412/1‑148 (MQ=255) ccAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAg > 8:183104/1‑148 (MQ=255) aaCTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGa > 7:161737/1‑147 (MQ=255) ccAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCaa < 2:155046/126‑1 (MQ=255) ccAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCaa > 1:155046/1‑126 (MQ=255) ccAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCa < 3:345368/149‑1 (MQ=255) aGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAgg > 2:111759/1‑149 (MQ=255) cgcTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGAcc > 8:214223/1‑116 (MQ=255) cgcTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGAcc < 7:214223/116‑1 (MQ=255) gcTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCg > 5:25239/1‑149 (MQ=255) gACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGc < 5:197415/149‑1 (MQ=255) ggCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGaa < 6:5700/147‑1 (MQ=255) ggCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGaa < 1:109217/147‑1 (MQ=255) gCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAgt < 2:77412/148‑1 (MQ=255) gCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAgt < 5:138453/148‑1 (MQ=255) gcgcTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCtt < 4:343564/149‑1 (MQ=255) cTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTccc < 5:250395/149‑1 (MQ=255) ccTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCaa < 2:216048/102‑1 (MQ=255) ccTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCaa > 1:216048/1‑102 (MQ=255) gATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGAGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGCCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTg > 4:159824/1‑148 (MQ=255) cACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAg < 8:161737/149‑1 (MQ=255) cccTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGc > 8:160188/1‑149 (MQ=255) cTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCg > 7:130402/1‑149 (MQ=255) ggTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCgg < 4:158832/147‑1 (MQ=255) ggTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCgg < 6:25239/147‑1 (MQ=255) ccGGTTTCTACGGCGAGTTGTACAGCGGCCGCCTGACCACGCCCGACCCGATTCCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGcc < 4:221745/149‑1 (MQ=255) cGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGCCCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGCCCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCGTCCCCTGC‑‑CCTGGAGCAAGGCCGCGTGGCCg > 7:126635/1‑149 (MQ=255) cGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAg > 4:312888/1‑137 (MQ=255) cGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAg < 3:312888/137‑1 (MQ=255) cGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCg < 3:312949/149‑1 (MQ=255) ggTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGc < 4:25452/149‑1 (MQ=255) gTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCt > 6:214658/1‑116 (MQ=255) gTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCt < 5:214658/116‑1 (MQ=255) tACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAg > 1:8429/1‑130 (MQ=255) tACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAg < 2:8429/130‑1 (MQ=255) cGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAAt < 8:130402/149‑1 (MQ=255) gAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGa < 7:160188/149‑1 (MQ=255) ttGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTCGCCATGGAAGAGTCTTCCAATGC‑‑CCTGGAGAAAGGCCGGGTTGACGCACTGTAATTCGACAt > 5:237599/1‑149 (MQ=255) cgagCGGCCGCCTGACCACGCCCGCCCCGATTGCCGTGCAATCGACCCTCAACGACCTCCAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGGCTTCCCATGG‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATcgcg < 8:126635/148‑1 (MQ=255) agagCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATTC‑‑CCTGGAGCAACGCCGGGTTGCCGCAATGGAATTCGACATcgcg > 4:19934/1‑149 (MQ=255) ggCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGtgat < 7:183104/149‑1 (MQ=255) ggCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGtgat < 1:13136/149‑1 (MQ=255) gccTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGTGATGAc > 2:82043/1‑148 (MQ=255) gccTGACCACGCCCGACCCAATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGc > 8:221528/1‑118 (MQ=255) gccTGACCACGCCCGACCCAATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGc < 7:221528/118‑1 (MQ=255) ggtcgaTTGCACGGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGTGATGACCAACCTGTCCCGCGac > 6:278087/4‑149 (MQ=255) gtcgaTTGCACGGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGTCCATCGAAGTGTCTTACCATGC‑‑CCAGGAGCAAGGCCCGGTTCACGCACTTGAAATCGACATCGAGTAGATGACCAACCTGTCCCGCGacc > 3:281060/3‑149 (MQ=255) ccgaTTGCCGTGCAAACGACCCACAAACACCTCAATAAATTGGGCGCCAGGGGCGTGGGCATTGTAGTGTTTTCCCATCCAACCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGTGATGACCAACCTGTCCCGCGac < 1:111759/149‑1 (MQ=255) ccGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGTGATGAcc < 2:242398/125‑1 (MQ=255) ccGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGAAGCACTGGAATTCGACATCGCGGTGATGAcc > 1:242398/1‑125 (MQ=255) | ACCAACGGCAAGACAAGTGTTACCCAACTGGTCGCCCAGGCGCTCGACCTGCTTGGCCAGCGCTGCGGCCTGATTGGCACCCTGGGTACCGGTTTCTACGGCGAGTTGCAGAGCGGCCGCCTGACCACGCCCGACCCGATTGCCGTGCAATCGACCCTCAACGACCTCAAGAAAGGCGGCGCCAGGGCCGTGGCCATGGAAGTGTCTTCCCATGC‑‑CCTGGAGCAAGGCCGGGTTGCCGCACTGGAATTCGACATCGCGGTGATGACCAACCTGTCCCGCGACC > NC_002947/1517138‑1517420 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |