Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,668,719 | G→C | 8.5% | D55H (GAC→CAC) | rpsP → | 30S ribosomal protein S16 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,668,719 | 0 | G | C | 8.5% | 185.1 / 7.1 | 59 | D55H (GAC→CAC) | rpsP | 30S ribosomal protein S16 |
Reads supporting (aligned to +/- strand): ref base G (30/24); new base C (3/2); total (33/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01 |
ATTCAGATTTGCAGTACCAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCGTGTTGCTCAGCTGCTG > NC_002947/1668572‑1668859 | aTTCAGATTTGCAGTACCAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGa > 4:130027/1‑149 (MQ=255) gATTTGCAGTACCAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGcc < 3:285260/149‑1 (MQ=255) aTTTGCAGTACCAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCg > 3:233858/1‑149 (MQ=255) ccAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGa < 3:266458/148‑1 (MQ=255) ccAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAg > 7:92078/1‑149 (MQ=255) ctgTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAg > 3:63366/1‑149 (MQ=255) ctgTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAg > 6:165107/1‑149 (MQ=255) aaCTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTttctt < 3:130027/149‑1 (MQ=255) cTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCCGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGTGCGTAGGTttctt‑c > 6:262772/1‑148 (MQ=255) cagcaCCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAAcc < 7:179538/149‑1 (MQ=255) caCCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCaa < 5:165107/149‑1 (MQ=255) ccGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑Caa > 4:121214/1‑142 (MQ=255) ccGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑Caa < 3:121214/142‑1 (MQ=255) gAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACGACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGgcg > 7:306939/1‑149 (MQ=255) aCGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGtt < 6:343550/110‑1 (MQ=255) aCGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGtt > 5:343550/1‑110 (MQ=255) cGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTGTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAAGCGCTGCTGGCGcc > 6:290668/1‑148 (MQ=255) ttCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCCGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGt < 5:262772/148‑1 (MQ=255) cacaTGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGtt > 8:222162/1‑147 (MQ=255) caTGGTAACCATTCGTCTGGCCCGTTGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑Caa < 4:64973/120‑1 (MQ=255) caTGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGAACG‑TGACCAACTCGAGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑Caa > 3:64973/1‑120 (MQ=255) aTGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCt > 7:129387/1‑149 (MQ=255) gTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTc < 8:92078/149‑1 (MQ=255) cATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTc > 1:342350/1‑148 (MQ=255) aTTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAg > 2:119371/1‑138 (MQ=255) aTTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAg < 1:119371/138‑1 (MQ=255) aTTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCaa > 7:130462/1‑149 (MQ=255) aTTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGCCaa < 3:208796/149‑1 (MQ=255) gCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTTCCAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCgg < 1:246474/137‑1 (MQ=255) cccGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAgcgc < 4:63366/149‑1 (MQ=255) tCGAAAAAGCGCCCATTCTACCAGCTGTCCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCgg < 5:63041/124‑1 (MQ=255) tCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTg > 6:181332/1‑149 (MQ=255) ctgAAAAAGCGACCATTCTACCACCTGACCG‑TTCCCAACTCGCGTAACGCCAGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACt < 7:318448/146‑1 (MQ=255) gAAAAAGCGCCCATTCTACCACCTGACCGTTGACCAACTCGCGTAACGCCCGTGCCGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTgg > 1:26634/1‑149 (MQ=255) aaaaaGCGCCCATTCTACCCCCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CACCCCAAGCGCTGCTGGCGCCTAAGTTAAGCAGTCGGGACACCACGAGCTCGTACCCTACTgcta > 8:318448/1‑146 (MQ=255) aGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGc < 7:222162/149‑1 (MQ=255) gcgcCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGcc < 5:228960/100‑1 (MQ=255) gcgcCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGcc > 6:228960/1‑100 (MQ=255) gcCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGa > 6:201874/1‑144 (MQ=255) gcCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGa < 5:201874/144‑1 (MQ=255) gcCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAg < 2:342350/149‑1 (MQ=255) ccATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTgg < 8:308918/138‑1 (MQ=255) ccATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTgg > 7:308918/1‑138 (MQ=255) accaccTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAg > 5:154103/1‑149 (MQ=255) accTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCg > 7:155941/1‑149 (MQ=255) ccTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGt > 5:134832/1‑149 (MQ=255) tGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCt > 1:27073/1‑149 (MQ=255) aCCG‑TGACCAACTCGCGTAACGCCCGTGACTGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGa < 8:306939/149‑1 (MQ=255) aCCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGt > 6:261680/1‑135 (MQ=255) aCCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGt < 5:261680/135‑1 (MQ=255) cG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGc > 3:155413/1‑149 (MQ=255) gACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCgtg > 7:225635/1‑149 (MQ=255) aCCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGAGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCgtg < 2:27073/148‑1 (MQ=255) caacgaaaCGGCCGTCACGGGCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCGTGTTGCt > 6:141932/7‑147 (MQ=255) gaaaCGGCCGTCACGGGCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCgtgt < 3:136016/137‑1 (MQ=255) gaaaCGGCCGTCACGGGCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCgtgt > 4:136016/3‑139 (MQ=255) gCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCGTGTTGCTCAGctgctg > 4:340785/1‑147 (MQ=255) ccGTCACGGGCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGcc < 5:325721/120‑1 (MQ=255) ccGTCACGGGCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGcc > 6:325721/1‑120 (MQ=255) | ATTCAGATTTGCAGTACCAGCTGCTGTATCAACTGCAGCACCGACTATAGGAACGATGTTCACATGGTAACCATTCGTCTGGCCCGTGGCGGCTCGAAAAAGCGCCCATTCTACCACCTGACCG‑TGACCAACTCGCGTAACGCCCGTGACGGCCGTTTCGTTGAGCGCGTAGGTTTCTT‑CAACCCAATCGCTGCTGGCGCCGAAGTTAAGCTGTCGGTCAACCAAGAGCGCGTCACCTACTGGCTGAGCCAGGGTGCACAGCCGTCTGAGCGTGTTGCTCAGCTGCTG > NC_002947/1668572‑1668859 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |