Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,853,215 | T→C | 7.2% | intergenic (+60/‑64) | relA → / → mazG | ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,853,215 | 0 | T | C | 7.2% | 157.1 / 2.1 | 55 | intergenic (+60/‑64) | relA/mazG | ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase |
Reads supporting (aligned to +/- strand): ref base T (26/25); new base C (2/2); total (28/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTAAA > NC_002947/1853076‑1853358 | tGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCg > 6:360884/1‑148 (MQ=255) gcgcTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCtg > 4:172416/1‑149 (MQ=255) cgcTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCtgt < 3:172416/149‑1 (MQ=255) gcTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCtgtg > 8:200695/1‑149 (MQ=255) gcTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCATAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAACCCCGCTCCTACAGGATGGATGCAGGGTTGAAATCTGCACCGTACCtgtg < 1:286554/149‑1 (MQ=255) gCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCcgcg < 7:200695/149‑1 (MQ=255) ctcGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGaagaag > 5:350918/1‑149 (MQ=255) gCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAATTCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGc < 7:188828/147‑1 (MQ=255) catcatCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAc > 1:234821/1‑149 (MQ=255) atcatcGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcc > 2:18404/1‑149 (MQ=255) tcatcGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCCACAGGTACGGTGCAGATTTCAAACCTGCATCCATCCTGTAGGAGCgg > 8:290214/1‑115 (MQ=17) tcatcGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCCACAGGTACGGTGCAGATTTCAAACCTGCATCCATCCTGTAGGAGCgg < 7:290214/115‑1 (MQ=17) atcGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgc > 8:236215/1‑149 (MQ=255) tcGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgcc > 5:321403/1‑149 (MQ=255) gagaCGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgcctg > 7:167563/1‑149 (MQ=255) gagaCGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgcctg > 3:179155/1‑149 (MQ=255) gagaCGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgcctg > 1:16238/1‑149 (MQ=255) gagaCGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGAcctgcct < 1:18404/148‑1 (MQ=255) gaCGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTa < 5:105454/149‑1 (MQ=255) gcggcgTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCcgc > 8:335602/1‑115 (MQ=255) gcggcgTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCcgc < 7:335602/115‑1 (MQ=255) aaTCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTacac > 5:231992/1‑149 (MQ=255) aTCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACAcc > 6:119575/1‑149 (MQ=255) tACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCtt > 3:5915/1‑148 (MQ=255) ccccTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTgac < 6:321403/149‑1 (MQ=255) cTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTgacgac > 2:334473/1‑149 (MQ=255) ccGGGGCGTCTGCTTCGCTGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCtgctgc < 7:236215/149‑1 (MQ=255) ggggCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCAc > 4:174330/1‑149 (MQ=255) cGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCa > 5:350902/1‑149 (MQ=255) tCTGCTTCGCGGGTAAACCCGCTCCTACCGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGTCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACATGCTGCACCTCATg < 8:172177/149‑1 (MQ=255) tCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTgg > 4:181842/1‑67 (MQ=255) tCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTgg < 3:181842/67‑1 (MQ=255) cTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGccc < 6:350918/149‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTATAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTCCCCCCTGGACGACCTGCTGCACCTCATGGCCCg > 7:55755/1‑149 (MQ=255) ttCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCg > 1:158160/1‑149 (MQ=255) cgcgGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCg < 5:360884/147‑1 (MQ=255) ccGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCAc < 4:293004/125‑1 (MQ=255) ccGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCAc > 3:293004/1‑125 (MQ=255) aCAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTgacgac > 3:39476/1‑108 (MQ=255) aCAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTgacgac < 4:39476/108‑1 (MQ=255) cAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACgg < 4:179155/148‑1 (MQ=255) cAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACgg < 2:16238/148‑1 (MQ=255) gatggatgCATGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCATGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCt < 3:193333/147‑1 (MQ=255) gatggatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGc > 7:267204/1‑149 (MQ=255) gatggatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGc < 5:119575/149‑1 (MQ=255) gatggatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGc < 8:267204/149‑1 (MQ=255) gatggatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGAATGAACTACACCCTTGACGACCTGCTGCACCTCATCGCCCGCCTGCTCGACCCTCAGTACGGCTga > 4:193333/1‑148 (MQ=39) tacggtgCAGATTTCAAACCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGccc > 6:103928/6‑122 (MQ=38) tacggtgCAGATTTCAAACCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGccc < 5:103928/117‑1 (MQ=38) gatgCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGt < 6:350902/149‑1 (MQ=255) cAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTggg < 3:174330/148‑1 (MQ=255) cAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGa < 2:234821/149‑1 (MQ=255) aGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGAc < 6:231992/149‑1 (MQ=255) tttGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCt > 4:191518/1‑148 (MQ=255) gAAATCTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTaaa < 4:5915/148‑1 (MQ=255) | TGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGTTGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGAGACCGGGGCGTCTGCTTCGCGGGTAAACCCGCTCCTACAGGATGGATGCAGGTTTGAAATCTGCACCGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAAGCCACCACCGAAGGACCTGCCTGTATGACCTACACCCTTGACGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTACGGCTGCCCGTGGGACCTAAA > NC_002947/1853076‑1853358 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |