Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 185,734 | C→A | 7.3% | E135D (GAG→GAT) | PP_0162 ← | ECF family RNA polymerase sigma‑70 factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 185,734 | 0 | C | A | 7.3% | 171.6 / 3.9 | 55 | E135D (GAG→GAT) | PP_0162 | ECF family RNA polymerase sigma‑70 factor |
Reads supporting (aligned to +/- strand): ref base C (24/27); new base A (2/2); total (26/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 |
TTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCAGAT > NC_002947/185588‑185882 | ttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCt < 7:274354/148‑1 (MQ=255) aGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGAGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGCTCCCCATCTGTTCGGCTATGGCCTGATGCTTCAGCCCCTCGCATTGa < 5:78449/149‑1 (MQ=255) gCGTGCGACGGTCATGGATTCAGCAGTGTTCTTCATAGCGCAGCACGTAGCAGTTATAGAGCGCATTGGCGATGTATCGCTCAAGGGTGCGCAGGGATATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGc < 7:171213/148‑1 (MQ=255) cGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCca < 2:183490/149‑1 (MQ=255) tGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGcgcg < 5:269803/149‑1 (MQ=255) gATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGAc > 6:78802/1‑149 (MQ=255) agcagTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTAcc > 6:247877/1‑149 (MQ=255) cagTCGTCTTCATAGCGCAGCACCTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCtt > 2:63344/1‑149 (MQ=255) agTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTg > 6:46455/1‑149 (MQ=255) agTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTg < 1:133492/149‑1 (MQ=255) gtcTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGtt > 4:332920/1‑149 (MQ=255) gtcTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGtt > 1:322943/1‑149 (MQ=255) gtcTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGtt < 4:60362/149‑1 (MQ=255) tcTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGttt < 2:322943/149‑1 (MQ=255) ttCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGAACCTTGGGttt > 7:54499/1‑147 (MQ=255) aTAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAgg < 3:332920/148‑1 (MQ=255) aTAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAgg < 5:46455/148‑1 (MQ=255) gcagcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCACGAATGCGCGACGTACCTAGGGATTGAGGCCGTc > 3:297832/1‑148 (MQ=255) gcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGc < 5:78802/149‑1 (MQ=255) gcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGc < 1:219632/149‑1 (MQ=255) gCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCGCATCTGTTCGGCGCTGGCCTTATGCTTCAGCCCCTCGCATTGAGCCAGCATGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGt < 1:158109/148‑1 (MQ=255) aTAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATAc > 7:134791/1‑149 (MQ=255) tAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACg > 2:257864/1‑149 (MQ=255) ttGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATCCTTCAGCCCCACGCATTTAGCCAGCAGGAATCCCCGACGTACCTTGGGTTTGAGCCCGACGAGCATGCCTCCAATACGCTCAAGCaa > 3:277777/1‑149 (MQ=255) gCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTgg < 2:257045/106‑1 (MQ=255) gCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTc > 3:178895/1‑149 (MQ=255) gCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGCCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTgg > 1:257045/1‑106 (MQ=255) gATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCca < 4:178895/149‑1 (MQ=255) gTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAg < 7:176606/108‑1 (MQ=255) gTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAg > 8:176606/1‑108 (MQ=255) gcgcTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCca > 7:23314/1‑143 (MQ=255) gcgcTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCca < 8:23314/143‑1 (MQ=255) gcACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCTCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGtctc > 8:139020/1‑148 (MQ=255) gcACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGtctc > 7:209207/1‑148 (MQ=255) cACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGa < 4:297832/149‑1 (MQ=255) cACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGa > 3:152935/1‑149 (MQ=255) ccccATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCCCGACGAACCAGGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGa > 8:184928/1‑149 (MQ=255) cccATCTGTTCGGCGATGGCGTGATGCTTCTGCCCCTCGCATTGAGCCAGCAGGAATTCGCGACGTACCTTGTGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTGCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc < 4:277777/149‑1 (MQ=255) ccATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAcc < 1:63344/149‑1 (MQ=255) ccATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc > 1:284068/1‑148 (MQ=255) cATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg > 2:219328/1‑142 (MQ=255) cATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 1:219328/142‑1 (MQ=255) aTCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAg < 8:209207/149‑1 (MQ=255) ctcaatgCGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTg > 8:178506/7‑148 (MQ=255) ctcaatgCGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTg < 7:178506/142‑1 (MQ=255) ttCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCATGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGt < 1:257864/145‑1 (MQ=255) atgCGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCGGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTcc > 6:249693/3‑149 (MQ=255) atgCGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCGGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTcc < 5:249693/147‑1 (MQ=255) gATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCgg > 5:209370/1‑118 (MQ=255) gATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCgg < 6:209370/118‑1 (MQ=255) ccTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCTAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATgg < 7:78728/149‑1 (MQ=255) aTGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTcc < 4:329329/136‑1 (MQ=255) aTGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTcc > 3:329329/1‑136 (MQ=255) cAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGcc < 4:152935/148‑1 (MQ=255) gCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTc > 3:310959/1‑148 (MQ=255) cTCGCATTGAGCCTGCAGGATTGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCTAAAGTCTCCAGAt < 8:54499/149‑1 (MQ=255) cTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCAGa > 6:199499/1‑148 (MQ=255) cTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCAGa > 8:296604/1‑148 (MQ=255) | TTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCAGAT > NC_002947/185588‑185882 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |