Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,006,336 | T→A | 8.3% | T112S (ACT→TCT) | PP_1789 ← | haloacid dehalogenase‑like family hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,006,336 | 0 | T | A | 8.3% | 154.4 / 3.5 | 57 | T112S (ACT→TCT) | PP_1789 | haloacid dehalogenase‑like family hydrolase |
Reads supporting (aligned to +/- strand): ref base T (25/26); new base A (3/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCTCGCGAGCAATAATTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTATGTGTTCTAAGAAATATGAA > NC_002947/2006192‑2006478 | gCTCGCGAGCAATAATTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAATCGATCAACCAGCGAGTATTCGGAGttttt < 2:216007/149‑1 (MQ=255) gCTCGCGAGCAATAATTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGttttt < 3:155186/149‑1 (MQ=255) tCGCGAGCAATAATTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGc > 5:116638/1‑149 (MQ=255) aataatTTCCTCTTTAGCATCTTGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCt < 3:199706/149‑1 (MQ=255) aataatTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGACTGGTCACCGCCAGAAACGATCAACCAGCAAGAAATCGGAGATTTTGCTCGAAGCt > 2:149628/1‑149 (MQ=255) ataatTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTc > 2:55163/1‑149 (MQ=255) tttCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCg > 4:224957/1‑148 (MQ=255) tttCCTCTTTAGAATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGATTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTAGTCGGAGGTTTTGCTCGAAGCGCCCg > 2:90734/1‑148 (MQ=255) ctctTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGc < 4:178688/149‑1 (MQ=255) tctTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGc > 5:329709/1‑148 (MQ=255) tctTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGATTTTGCTCGAAGCTCCCGTATGc > 3:130430/1‑148 (MQ=255) tctTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGATTTTGCTCGAAGCTCCCGTATGc > 3:125162/1‑148 (MQ=255) gCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGc < 1:232741/149‑1 (MQ=255) gCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTAACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCAAATCGc > 8:238947/1‑149 (MQ=255) cTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCtata > 2:269615/1‑149 (MQ=255) ggCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCtata < 6:116638/146‑1 (MQ=255) ggCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTatat < 3:266196/147‑1 (MQ=255) gCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAACTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCg > 8:338863/1‑148 (MQ=255) ttCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCg > 4:76738/1‑146 (MQ=255) ccGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCa < 3:76738/146‑1 (MQ=255) aTCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCgctgc < 7:338863/149‑1 (MQ=255) aaaaaTCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTaa > 5:313935/1‑149 (MQ=255) aTCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGTAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGtt < 3:224957/149‑1 (MQ=255) ctcAGCAAGCTTTCGCTGTGCAAAAAACTCACGGAGTTCGGTCTGGTCACCGCCAGAAAGGATCAACCAGCGAGTATTCTGAGTTTATGGTCGAAGCTCCCGTATGCAACTCGCTATATCGCAGCTGAGCAGCCCGCTGCTAACGttt > 3:107940/1‑148 (MQ=255) aGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCa < 4:303889/148‑1 (MQ=255) cAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAAc > 6:26490/1‑139 (MQ=255) cAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAAc < 5:26490/139‑1 (MQ=255) gCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAg < 1:149628/149‑1 (MQ=255) gCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTc < 6:329709/148‑1 (MQ=255) tgCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTTTATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGaa < 1:269615/149‑1 (MQ=255) aaaaaCCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATa > 6:309238/1‑135 (MQ=255) aaaaaCCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATa < 5:309238/135‑1 (MQ=255) aaaaCCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTg < 1:55163/149‑1 (MQ=255) aaaCCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCTGAGTTTTTGCTCGAAGCTCCCGTATg > 6:366741/1‑83 (MQ=255) aaaCCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATg < 5:366741/83‑1 (MQ=255) cTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGctct > 6:344126/1‑148 (MQ=255) tCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTaa > 1:222509/1‑149 (MQ=255) tCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTaa > 8:144089/1‑149 (MQ=255) tCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGAAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTaa > 7:323147/1‑149 (MQ=255) cGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGa < 2:222509/149‑1 (MQ=255) ggAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGaa < 5:344126/149‑1 (MQ=255) ggAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGaa < 6:161083/149‑1 (MQ=255) gTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTACCGTTTTCAGAATAGCGGTCTAGAAGGTGCTCTAATGAAGGt > 1:244353/1‑149 (MQ=255) gTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGGTCTAATGAAGGTCCtt > 2:261502/1‑148 (MQ=255) gTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTc < 7:144089/149‑1 (MQ=255) gTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAAt > 4:173478/1‑133 (MQ=255) gTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAAt < 3:173478/133‑1 (MQ=255) tCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTaa > 1:214281/1‑131 (MQ=255) tCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTaa < 2:214281/131‑1 (MQ=255) tCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTa < 4:327011/130‑1 (MQ=255) tCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTa > 3:327011/1‑130 (MQ=255) aCGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTAt > 4:138410/1‑149 (MQ=255) aCGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTAGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTAt < 7:238947/149‑1 (MQ=255) gATCAACCAGCGAGTATTCGGAGATTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTAtgt < 4:130430/149‑1 (MQ=255) gATCAACCAGCGAGTATTCGGAGATTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTAtgt < 4:125162/149‑1 (MQ=255) tATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCGGAGCAGGCCGCTGCTAACGTTTTCATCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTATGTGTTCTAAGAAatat < 1:90734/149‑1 (MQ=255) cGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTATGTGTTCTAAGAAATATGaa > 4:109204/1‑148 (MQ=255) gAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTAt > 7:259105/1‑127 (MQ=255) gAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTAt < 8:259105/127‑1 (MQ=255) | GCTCGCGAGCAATAATTTCCTCTTTAGCATCTGGGCTTCCGAATATGCCGCCATCAAAAATCTCAGCAAGCTTTCGCTGTGCAAAAACCTCACGGAGTTCGGTCTGGTCACCGCCAGAAACGATCAACCAGCGAGTATTCGGAGTTTTTGCTCGAAGCTCCCGTATGCCACTCGCTATATCGCAGCTGAGCAGGCCGCTGCTAACGTTTTCAGCATAGCGGTCTAGAAGGTGCTCTAATGAAGGTCCTTCAGCGTGTTGGGCGACTATGTGTTCTAAGAAATATGAA > NC_002947/2006192‑2006478 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |