| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,037,576 | T→A | 9.1% | intergenic (+170/+29) | PP_1810 → / ← PP_5478 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,037,576 | 0 | T | A | 9.1% | 221.4 / 10.4 | 77 | intergenic (+170/+29) | PP_1810/PP_5478 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (38/32); new base A (2/5); total (40/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.54e-01 | |||||||||||
TGTAGGCATGGGATGGATGGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGTCACCTTCGCGTACCAG > NC_002947/2037430‑2037724 | tGTAGTCATGGGATGGATTGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCGCGCTGCCACTGTGTGGGGTGCTTGGCGAATGCAGTGGTTTGCCCTCGCCACGTCTGGCGTGATGAAGCCGATTTCTTCTGACTGCAATCGAGGCATa < 8:130369/148‑1 (MQ=255) tAGGCATGGGATGGATGGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGc < 2:102264/148‑1 (MQ=255) ggCATGGGATGGATGGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATCTCTTCTGACTGCAAGCGAGGCATAGCCTc > 3:295483/1‑149 (MQ=255) aTGGGATGGATGGCACCGGCGGTGCCGGTGTTCGCGGGCGCACCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGcc > 1:334203/1‑149 (MQ=255) tGGGATGGATGGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAACGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCt > 7:119774/1‑149 (MQ=255) gatggatgGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCTATGCCTCGCTTgca < 6:118738/149‑3 (MQ=255) atggatggCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCTATGCCTCGCTTgcag < 6:307621/149‑4 (MQ=39) tggatggCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCTATGCCTCGCTTgcagt < 7:73678/149‑5 (MQ=39) gatggCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATCTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGtctc < 4:295483/148‑1 (MQ=255) cACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCa > 5:154856/1‑149 (MQ=255) cACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCa > 4:63882/1‑149 (MQ=255) cACCGGCGGTGCCGGTGTTCGCGGGCGCCCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCa > 1:205894/1‑149 (MQ=255) gcggTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTccc > 1:316810/1‑149 (MQ=255) cggTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCt > 3:272887/1‑149 (MQ=255) ggTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCtt < 1:23112/149‑1 (MQ=255) gCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAg < 4:272887/149‑1 (MQ=255) gcgGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTcgc > 4:228887/1‑125 (MQ=255) cgcgcCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc < 7:150722/149‑1 (MQ=255) cgcgcCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc < 4:185636/149‑1 (MQ=255) cgcgcCCGCTCCCACAGTGTGGGGTGCTTGGCCAACGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc < 8:119774/149‑1 (MQ=255) gcgcCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCATCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCTATGCATAGCCTCTCATGGTCTCGC‑TTCATTCCCTTCATTGGTGCCTGTTTTTc > 6:332810/1‑148 (MQ=255) ccACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGc < 3:356014/99‑1 (MQ=255) ccACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGc > 4:356014/1‑99 (MQ=255) ccACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc > 7:166795/1‑138 (MQ=255) ccACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc < 8:166795/138‑1 (MQ=255) ccACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGAt > 5:287319/1‑149 (MQ=255) acaGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc < 8:153469/136‑1 (MQ=255) acaGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTc > 7:153469/1‑136 (MQ=255) tgtgGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAAtc < 7:279586/138‑1 (MQ=255) tgtgGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAAtc > 8:279586/1‑138 (MQ=255) ggtgTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGTCCTGATGAAGGCCATTTCTTCTGTCTGCTAGCGAGGCATAGACTCTCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAAtctc < 5:45483/134‑1 (MQ=255) ggggTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGTTCTCGC‑GTCATTCCCTACAGTGGTGCCTGTTTTTAGCAAtctc > 6:45483/1‑137 (MQ=255) ggTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTtcatca < 3:63882/149‑1 (MQ=255) gTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAg < 1:329164/149‑1 (MQ=255) cTTGGCCAATGCAGTGGTTTGCCCTCGCCCCGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGc > 4:41385/1‑149 (MQ=255) gCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCtttt > 8:17075/1‑149 (MQ=255) gCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCtttt < 6:287319/149‑1 (MQ=255) ccAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTg < 2:308264/149‑1 (MQ=255) cAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGc > 5:58481/1‑149 (MQ=255) aGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGc < 2:316810/149‑1 (MQ=255) aGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGc < 7:17075/149‑1 (MQ=255) tGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGtt > 6:52045/1‑126 (MQ=255) tGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGtt < 5:52045/126‑1 (MQ=255) gTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCcag > 3:81712/1‑148 (MQ=255) tttGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAAtc < 7:90482/112‑1 (MQ=255) tttGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAAtc > 8:90482/1‑112 (MQ=255) ccTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTaa > 6:23889/1‑149 (MQ=255) tCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATc > 5:227870/1‑149 (MQ=255) aCGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTg < 6:154856/149‑1 (MQ=255) gCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCa < 4:81712/148‑1 (MQ=255) catgatgaATCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTTTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAg < 5:332810/146‑1 (MQ=255) tgaAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCtt > 2:50560/1‑149 (MQ=255) gCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTgg > 7:303687/1‑149 (MQ=255) cATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATc > 5:320014/1‑124 (MQ=255) cATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATc < 6:320014/124‑1 (MQ=255) cATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcg > 2:204950/1‑149 (MQ=255) cATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcg > 4:357878/1‑149 (MQ=255) cATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTACCTTCAGTGGTGCCAGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATACGCTCCGCCCAGCATCTTGTGgtcg > 6:202475/1‑149 (MQ=255) tttCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGCGGTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcgt > 1:73653/1‑149 (MQ=255) ttcttcTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcgtc > 3:139075/1‑148 (MQ=255) ttcttcTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcgtc < 4:139075/148‑1 (MQ=255) ttctGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTc > 5:100822/1‑148 (MQ=255) ttctGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTc > 7:18971/1‑148 (MQ=255) ctGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCCGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTcc < 2:205894/147‑1 (MQ=255) gACTGCAAGCGAGGCATAGCCTCGCCT‑GTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGt > 5:243365/1‑148 (MQ=255) aCTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCAt < 2:73653/146‑1 (MQ=255) aCTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GGCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCAt < 2:334203/146‑1 (MQ=255) cTGCAAGCGATGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGTc < 6:58481/148‑1 (MQ=255) tGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGGTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGTCAc > 7:191667/1‑149 (MQ=255) tGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtc < 5:297048/135‑1 (MQ=255) tGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtc > 6:297048/1‑135 (MQ=255) tGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGTCAc > 3:192161/1‑149 (MQ=255) cAATCGAGGCATAGCCTCTCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGTTAATCCGCTGCTCCCAGGATCTTGTGGTCGTCTTCCATGTCAcc < 5:202475/148‑1 (MQ=255) aggCGAGGCTATGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTtgtg < 6:282547/127‑1 (MQ=255) aggCGAGGCTATGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTtgtg > 5:282547/3‑129 (MQ=255) aggCGAGGCTATGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcgt < 4:186802/132‑1 (MQ=255) aggCGAGGCTATGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGgtcgt > 3:186802/3‑134 (MQ=255) tAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGTCACCTTCGCGTACCAg > 5:167360/1‑149 (MQ=255) | TGTAGGCATGGGATGGATGGCACCGGCGGTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGGGGTGCTTGGCCAATGCAGTGGTTTGCCCTCGCCACGTCTGGCCTGATGAAGCCCATTTCTTCTGACTGCAAGCGAGGCATAGCCTCGCCTGGTCTCGC‑GTCATTCCCTTCAGTGGTGCCTGTTTTTCGCAATCTCGATGTCGTTCATCAGGGCTTTTGCGGTGGCCAGCAGGTAATCCGCTGCGCCCAGCATCTTGTGGTCGTCTTCCATGTCACCTTCGCGTACCAG > NC_002947/2037430‑2037724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |