| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,628 | C→T | 13.8% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,628 | 0 | C | T | 13.8% | 210.9 / 23.6 | 94 | D378D (GAC→GAT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (44/37); new base T (7/6); total (51/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.29e-01 | |||||||||||
GCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195480‑195775 | gccgcggcgATTTCCAGACCCCGGCCTATGACGTCTACAACAACGCTGCGACCTTCAGCATCCCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGac < 8:327196/146‑1 (MQ=11)gCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGac < 4:150676/149‑1 (MQ=35) attCCAGCCCCCGGCCAATGACGTCTACAACAACGCATCGACCGTCAGCGTCACCATCCAGAACGCCACCGGCGTTAATTTCGAGCACCTGACCC‑CCAATCCCCCCCCGGCTCAGACCACGATCAACGACTCTGTCGACACCACCACcg < 2:180663/148‑1 (MQ=14) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACg > 8:108173/1‑149 (MQ=39) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGTCGGAAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACGACCACCGCGAC‑CCTGACGGCGAGc < 6:117657/149‑1 (MQ=255) caacaaCGGTTCGACCGTCAGCATCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGt < 8:216053/147‑1 (MQ=37) aacaacGGTTCAACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCAc < 5:185992/149‑1 (MQ=12) aacaacGGTGCGACCGGCAGCGGCACCATCGAGAACGCCACAGTGGGTAATTTCGAGCAAATGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCAc < 2:3809/149‑1 (MQ=11) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAc‑c < 5:104542/124‑1 (MQ=38) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAc‑c > 6:104542/1‑124 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCg > 2:96222/1‑148 (MQ=17) aacGGTTCGACCGTCAGCATCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCg > 7:173724/1‑148 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGaa < 1:226939/149‑1 (MQ=17) tCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 5:325954/1‑149 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 2:351891/1‑149 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 8:50763/1‑149 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACAGGCGTTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGAGTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 3:110012/149‑1 (MQ=255) ccGTCAGCATCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg < 8:173724/149‑1 (MQ=38) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 6:44850/1‑149 (MQ=17) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa > 4:212254/1‑148 (MQ=17) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTCAt > 6:112787/1‑148 (MQ=12) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 3:139177/149‑1 (MQ=17) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 4:139177/1‑148 (MQ=17) gTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGCCTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 8:329241/1‑149 (MQ=255) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAATGCGGCGTGATCACTTa < 7:339586/149‑1 (MQ=12) cACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGAAGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca > 5:311927/1‑149 (MQ=255) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCGCGAATCCGCCCCCGGCTCAGCCCACGATCAACGCCTCGGTCGACACCCCTACCCCGAC‑CCTGCCGGCGAGCCCGACGGTCACCGAAGGCGGCGTGATCAc > 1:256112/1‑145 (MQ=11) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc < 2:256112/144‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca < 6:325954/148‑1 (MQ=17) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca < 8:22852/148‑1 (MQ=17) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTCACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:59377/1‑149 (MQ=255) aTCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt < 5:24726/149‑1 (MQ=39) gaACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 2:359344/1‑149 (MQ=39) aCGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGc < 5:274472/104‑1 (MQ=40) aCGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGc > 6:274472/1‑104 (MQ=40) cGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 7:116027/1‑147 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGc > 7:132751/1‑103 (MQ=12) cGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGc < 8:132751/103‑1 (MQ=12) cGCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 6:202562/149‑1 (MQ=17) gccagaggcggTAATTTGGAGCAACTGACCC‑CGAATCCGAGCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg < 2:139136/143‑1 (MQ=11) gCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc > 6:53819/1‑138 (MQ=17) gCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc < 5:53819/138‑1 (MQ=17) gCCACAGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 6:320763/1‑149 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 8:42301/1‑148 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 2:93233/1‑148 (MQ=17) ccGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCg > 6:95085/1‑104 (MQ=38) ccGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCg < 5:95085/104‑1 (MQ=38) tggcggTATTTTCGATCAACTTACCC‑CGAATCCGACCCCGGCTCAGACCACGTTCTACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 5:213174/148‑1 (MQ=11) gcggTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt > 2:247851/1‑149 (MQ=17) gTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc < 4:330976/149‑1 (MQ=21) gTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc > 5:298373/1‑149 (MQ=39) tAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 3:348364/149‑1 (MQ=17) tAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 6:125062/149‑1 (MQ=17) aTTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAGTTACACCGTGACCCTGAGCAACCCTGCCCa < 1:30463/148‑1 (MQ=12) tttCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 7:330831/1‑149 (MQ=39) tttCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCACGTCGGTCACCGAAGGCGTCGTGATAACTTACACCCTGACCCTGAGCAACCCTGCCCAGa > 8:243398/1‑149 (MQ=255) ttCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc > 7:338103/1‑149 (MQ=17) gAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACgtc > 5:308806/1‑147 (MQ=12) aGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 3:212254/149‑1 (MQ=21) aGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 7:108173/149‑1 (MQ=39) aCCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt > 2:116469/1‑149 (MQ=12) ccc‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt > 4:110704/1‑148 (MQ=12) cc‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc > 5:341567/1‑125 (MQ=14) cc‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 6:341567/125‑1 (MQ=14) cc‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCCGACGCCGGTAACCGTg > 7:318130/1‑148 (MQ=255) cc‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCAACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 1:68245/1‑148 (MQ=255) c‑cGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGac < 8:338103/149‑2 (MQ=255) c‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGac > 1:292637/1‑148 (MQ=9) c‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 5:44850/149‑1 (MQ=255) c‑cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAACGTGaa > 2:12361/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 7:42301/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACCACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCCGTCACCGAAGGCGGCATCCTCACTAACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTCACCGTGAAc > 7:252449/1‑149 (MQ=14) actCCGACCCCGGCGCAGTCCACGATGAACGACTCGGTCGACACCACCACCGCGAC‑ACTTACGGCGAGCCCGTCGGTAACCGAAGGCGGCTTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTTAACCt < 2:248537/147‑1 (MQ=14) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt > 7:145547/1‑149 (MQ=255) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 7:50763/149‑1 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 4:119139/1‑148 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACACTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 3:187100/1‑148 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa > 4:245264/1‑149 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGGCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa < 7:258358/149‑1 (MQ=255) cccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 3:119139/149‑1 (MQ=38) ggCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACTGTGAACCTGTCCAACGGc > 2:212129/1‑148 (MQ=21) cACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 3:76202/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 2:298458/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCAACACCGCGAC‑ACTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGTCCAAACGATTa > 3:312028/1‑149 (MQ=255) cGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 7:329241/149‑1 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:166761/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc > 6:371289/1‑137 (MQ=40) gATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc < 5:371289/137‑1 (MQ=40) tCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 8:116027/149‑1 (MQ=39) aCGACTCGGTCGACCCCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 1:340180/1‑147 (MQ=255) aCGACTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa < 8:145547/149‑1 (MQ=255) cGACTCGGTCGACACCACTACCGCGACACCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa > 1:16696/1‑149 (MQ=255) cTCGGTCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 1:12361/149‑1 (MQ=255) ggTCGACCCCCCCCCCGCCAC‑CCTCCGGGCTAGCCCGTGGTTCACCTATGGCGGGTTTTTCACTACCACCGTTACCCTTCGCAACCTGCCCCTGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt < 2:340180/148‑1 (MQ=2) gTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 7:283867/1‑148 (MQ=39) tCGACACCACTACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaa < 5:320763/149‑1 (MQ=255) caccaccacCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 8:455/1‑106 (MQ=255) caccaccacCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 5:162781/1‑148 (MQ=39) | GCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCC‑CGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAC‑CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACC > NC_002947/195480‑195775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |