Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,236,975 | C→A | 8.9% | intergenic (+70/+58) | uvrB → / ← PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,236,975 | 0 | C | A | 8.9% | 136.8 / 3.5 | 45 | intergenic (+70/+58) | uvrB/PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter |
Reads supporting (aligned to +/- strand): ref base C (16/25); new base A (2/2); total (18/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.09e-01 |
CCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAAC > NC_002947/2236827‑2237108 | ccGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTgc > 4:239837/1‑149 (MQ=255) ccGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTgc < 1:267443/149‑1 (MQ=255) gcgACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTgcgc > 7:105282/1‑149 (MQ=255) tGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTTGGAGCGGGCGTGGCCGCGAAGAATTAAAAGCGGTGGCTGGCACCCGCTGCGCCCgtgt > 6:54104/1‑149 (MQ=255) cGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCgg < 3:114048/148‑1 (MQ=255) tGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCGCAGCCGgtgcca < 2:242339/138‑4 (MQ=255) tGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCGCAGCCGgtgcca > 1:242339/1‑135 (MQ=255) gcgcAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCt > 7:62167/1‑149 (MQ=255) aGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCg > 3:152842/1‑124 (MQ=255) aGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCg < 4:152842/124‑1 (MQ=255) aGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCca < 8:19514/149‑1 (MQ=255) gCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAg < 1:32474/148‑1 (MQ=255) tGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGAc < 3:215953/149‑1 (MQ=255) gACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGAcc > 1:6449/1‑149 (MQ=255) cGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGc < 8:62167/149‑1 (MQ=255) agaTTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCat < 6:183317/149‑1 (MQ=255) gaTTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatc < 5:313955/149‑1 (MQ=255) gaTTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatc > 1:185296/1‑149 (MQ=255) gaTTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCGCAGCCGgtgc < 8:65830/115‑2 (MQ=255) gaTTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCGCAGCCGgtgc > 7:65830/1‑114 (MQ=255) gcAGCTGCGGGAGCGGTTGATCCGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatctgatct < 6:109228/149‑1 (MQ=255) gcAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatctgatct < 7:57699/149‑1 (MQ=255) aGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTAAACGCGGTGGCTGGCACCCGCTGCGCCCGTGTTAGCGGGCCTTCCCCCACCCACAGGGCCCGCatctgaacttg > 4:66817/1‑147 (MQ=25) cGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAAt < 5:54104/147‑1 (MQ=255) cGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATa < 7:308886/148‑1 (MQ=255) cGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATa < 2:107280/148‑1 (MQ=255) ggAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGcc < 3:239837/149‑1 (MQ=255) ttGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATgg < 2:185296/149‑1 (MQ=255) agcagcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTcc < 7:69186/106‑1 (MQ=255) agcagcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTcc > 8:69186/1‑106 (MQ=255) gcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCcaca < 7:107967/106‑1 (MQ=255) gcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCcaca > 8:107967/1‑106 (MQ=255) aaGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCt < 3:66817/148‑1 (MQ=255) gcgGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTc < 8:105282/149‑1 (MQ=255) cgGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTcc < 2:6449/149‑1 (MQ=255) aGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCggg > 4:37586/1‑149 (MQ=255) gCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGt > 4:118316/1‑149 (MQ=255) gTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTcagcag > 8:193966/1‑149 (MQ=255) cccGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGTCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCAc > 6:127714/1‑149 (MQ=255) ccGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCAcc < 3:37586/149‑1 (MQ=255) aTTCAACGCGGTGGCTGGCACCGGCTTCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATg < 3:118316/149‑1 (MQ=255) ttCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTTAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGc > 2:129649/1‑149 (MQ=255) ttCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAAcc > 5:156739/1‑110 (MQ=255) ttCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAAcc < 6:156739/110‑1 (MQ=255) tCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCCGCACCGCCACCATGCt > 5:280232/1‑149 (MQ=255) gctggcACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGTCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAAc < 5:127714/148‑1 (MQ=255) tGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCgg > 4:221401/1‑103 (MQ=255) tGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCgg < 3:221401/103‑1 (MQ=255) | CCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAAC > NC_002947/2236827‑2237108 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |